Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HNQ25_RS19415 Genome accession   NZ_CP060009
Coordinates   4114878..4116470 (+) Length   530 a.a.
NCBI ID   WP_179546259.1    Uniprot ID   -
Organism   Pseudomonas sediminis strain B10D7D     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4109878..4121470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNQ25_RS19390 (HNQ25_19390) - 4110868..4111458 (-) 591 WP_244968157.1 TetR/AcrR family transcriptional regulator -
  HNQ25_RS19395 (HNQ25_19395) pgeF 4111626..4112357 (-) 732 WP_179545690.1 peptidoglycan editing factor PgeF -
  HNQ25_RS19400 (HNQ25_19400) rluD 4112354..4113328 (-) 975 WP_106732813.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HNQ25_RS19405 (HNQ25_19405) - 4113467..4114459 (+) 993 WP_179545691.1 outer membrane protein assembly factor BamD -
  HNQ25_RS19410 (HNQ25_19410) - 4114652..4114888 (+) 237 WP_099522406.1 PP0621 family protein -
  HNQ25_RS19415 (HNQ25_19415) pilS 4114878..4116470 (+) 1593 WP_179546259.1 ATP-binding protein Regulator
  HNQ25_RS19420 (HNQ25_19420) pilR 4116473..4117813 (+) 1341 WP_179545692.1 sigma-54 dependent transcriptional regulator Regulator
  HNQ25_RS19425 (HNQ25_19425) thiO 4117915..4119009 (-) 1095 WP_244968158.1 glycine oxidase ThiO -
  HNQ25_RS19430 (HNQ25_19430) - 4119122..4119646 (+) 525 WP_179545694.1 GspH/FimT family pseudopilin -
  HNQ25_RS19435 (HNQ25_19435) - 4119744..4120220 (+) 477 WP_179545695.1 GspH/FimT family pseudopilin -
  HNQ25_RS19440 (HNQ25_19440) pilV 4120217..4120678 (+) 462 WP_106732807.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59035.14 Da        Isoelectric Point: 8.1959

>NTDB_id=473278 HNQ25_RS19415 WP_179546259.1 4114878..4116470(+) (pilS) [Pseudomonas sediminis strain B10D7D]
MIADTSVQNSKQGQRILRLYHFYRLTIGLALILLISSNLDEQLLDVVHIELFRTGSWVYLILNIFIAVLVQKPKHLVQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAIAAMALIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQVSESLAEQRAADVASLEELNEQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELSGKIID
PHCPELVKRLQQWLHNPTLRPDSLQAQVDGPVLQPSFISLQRGDQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLHGPDQRLAQIIQDHSKRMNMVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPAD
RQIHLETQGGSLQTRMDPHQLTQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDESSDLPVLEILDDGPGVPPEQEQHIFEP
FYTTENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=473278 HNQ25_RS19415 WP_179546259.1 4114878..4116470(+) (pilS) [Pseudomonas sediminis strain B10D7D]
GTGATCGCTGACACCAGCGTACAGAACAGCAAACAAGGGCAGCGCATCCTCAGGCTCTATCACTTCTATCGCCTGACCAT
CGGCCTGGCGCTGATCCTGCTGATTTCCAGCAACCTCGACGAGCAGTTGCTGGACGTCGTGCATATCGAGCTGTTTCGCA
CCGGCAGCTGGGTCTACCTGATCCTCAACATCTTCATCGCCGTGCTGGTGCAAAAGCCCAAGCACCTGGTGCAGCTGTTC
AGCCTGGCGCTGGTCGACGTGATATTCCTCTCGGCCCTGTTCTACGCAGCCGGCGGCACGCCCAGCGGCATCGGCAACCT
GCTGGTGGTCGCCGTGGCCATCGCCAATATCCTGCTGCGCGGCCGCATCGGCCTGCTGATCGCCGCCATTGCCGCGATGG
CGCTGATCTACCTGACCTTCTACCTCAGCCTCAGCCGCCCCGCTGCTGCCGCACAATACGTCCAGGCCGGCGCCCTCGGC
GCGCTGTGCTTCGCCGGCGCCTTGTTCATCCAGGGCATCACCCGCCGCCTGCAGGTCAGCGAAAGCCTGGCCGAACAACG
CGCAGCCGACGTCGCCAGTCTGGAAGAACTCAACGAGCAGATCCTGCAGCGCATGCGCACCGGCATTCTGGTGCTCGACA
CCCAACATCGCGTACTGCTGGCAAACCAGGGCGCGACGCAGCTGCTTGGGCGAGGTGAACTCAGCGGCAAGATCATCGAC
CCGCACTGCCCAGAACTGGTCAAACGCCTGCAACAGTGGCTGCACAACCCAACCCTGCGCCCTGACAGCCTGCAGGCGCA
GGTCGACGGTCCGGTGCTACAGCCCAGTTTCATCTCCCTGCAACGCGGCGATCAGCAGCACACCCTGGTGTTTCTTGATG
ACATCTCGCAGATCGCTCAGCAGGCGCAACAGCTCAAATTAGCTTCGCTCGGCCGCCTGACCGCTGGCATCGCTCACGAA
ATTCGTAATCCGCTCGGCGCCATCAGCCACGCAGCGCAGCTACTGCAGGAGTCGGAGGATTTGCACGGCCCGGATCAGCG
CCTGGCGCAGATCATCCAGGACCACTCCAAGCGCATGAACATGGTGATTGAGAACGTCCTGCAACTGTCGCGCAGGCGCC
AGGCCGAGCCGCAACTGCTCGATCTGAAATACTGGCTGCACCGCTTCGCCAGCGAATTCCGCAGCTCGGCACCGGCTGAT
CGACAGATCCATCTGGAAACCCAGGGCGGCAGCCTGCAAACACGCATGGACCCGCACCAGTTGACCCAGGTGCTGACCAA
TCTGGTGCAAAATGGCCTGCGCTACAGCGCGCAGAAACACCGACTCGGCCAGGTCTGGCTACGCCTGTTCCGCGACGAGA
GCAGCGATCTGCCAGTGCTGGAAATCCTCGACGACGGCCCCGGTGTGCCGCCCGAGCAGGAGCAGCACATCTTCGAGCCC
TTCTACACCACCGAGAACAAGGGCACCGGCCTCGGCCTGTATATTTCTCGCGAGCTGTGCCAGGGCAACCAGGCCCGCCT
CGACTATAAACCTCGTGAAGGGGGCGGCAGTTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(199-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.241

98.491

0.662