Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   HZS92_RS16415 Genome accession   NZ_CP059999
Coordinates   3792115..3792234 (-) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas citri pv. citri strain B2     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3787115..3797234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS92_RS16400 (HZS92_03457) - 3788279..3789892 (+) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  HZS92_RS16405 (HZS92_03458) pilR 3790217..3791611 (+) 1395 WP_015463522.1 sigma-54 dependent transcriptional regulator Regulator
  HZS92_RS16410 (HZS92_03459) - 3791816..3791983 (-) 168 WP_015463523.1 hypothetical protein -
  HZS92_RS16415 (HZS92_03460) pilB 3792115..3792234 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  HZS92_RS16420 (HZS92_03462) pilB 3792728..3794464 (-) 1737 WP_011052125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HZS92_RS16425 (HZS92_03463) - 3794528..3794983 (-) 456 WP_015463526.1 pilin -
  HZS92_RS16430 (HZS92_03464) - 3795093..3795533 (-) 441 WP_011052127.1 pilin -
  HZS92_RS16435 (HZS92_03465) pilC 3795889..3797145 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=473157 HZS92_RS16415 WP_005915819.1 3792115..3792234(-) (pilB) [Xanthomonas citri pv. citri strain B2]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=473157 HZS92_RS16415 WP_005915819.1 3792115..3792234(-) (pilB) [Xanthomonas citri pv. citri strain B2]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAGCCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385