Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HZS92_RS16405 Genome accession   NZ_CP059999
Coordinates   3790217..3791611 (+) Length   464 a.a.
NCBI ID   WP_015463522.1    Uniprot ID   A0A7S6YVA4
Organism   Xanthomonas citri pv. citri strain B2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3785217..3796611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS92_RS16385 (HZS92_03454) - 3785376..3785891 (-) 516 WP_011052123.1 hypothetical protein -
  HZS92_RS16390 (HZS92_03455) sucD 3785978..3786853 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  HZS92_RS16395 (HZS92_03456) sucC 3786878..3788047 (-) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  HZS92_RS16400 (HZS92_03457) - 3788279..3789892 (+) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  HZS92_RS16405 (HZS92_03458) pilR 3790217..3791611 (+) 1395 WP_015463522.1 sigma-54 dependent transcriptional regulator Regulator
  HZS92_RS16410 (HZS92_03459) - 3791816..3791983 (-) 168 WP_015463523.1 hypothetical protein -
  HZS92_RS16415 (HZS92_03460) pilB 3792115..3792234 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  HZS92_RS16420 (HZS92_03462) pilB 3792728..3794464 (-) 1737 WP_011052125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HZS92_RS16425 (HZS92_03463) - 3794528..3794983 (-) 456 WP_015463526.1 pilin -
  HZS92_RS16430 (HZS92_03464) - 3795093..3795533 (-) 441 WP_011052127.1 pilin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50105.56 Da        Isoelectric Point: 6.6973

>NTDB_id=473156 HZS92_RS16405 WP_015463522.1 3790217..3791611(+) (pilR) [Xanthomonas citri pv. citri strain B2]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELGNILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=473156 HZS92_RS16405 WP_015463522.1 3790217..3791611(+) (pilR) [Xanthomonas citri pv. citri strain B2]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGGAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.851

99.784

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491