Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | H5J27_RS26990 | Genome accession | NZ_CP059995 |
| Coordinates | 5694316..5695188 (+) | Length | 290 a.a. |
| NCBI ID | WP_033976386.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain NY3045 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5689316..5700188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5J27_RS26965 (H5J27_26965) | nadC | 5689664..5690512 (+) | 849 | WP_033976390.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| H5J27_RS26975 (H5J27_26975) | pilA | 5690701..5691156 (-) | 456 | WP_033976389.1 | pilin | Machinery gene |
| H5J27_RS26980 (H5J27_26980) | pilB | 5691388..5693088 (+) | 1701 | WP_033976388.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| H5J27_RS26985 (H5J27_26985) | pilC | 5693092..5694312 (+) | 1221 | WP_033976387.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| H5J27_RS26990 (H5J27_26990) | pilD | 5694316..5695188 (+) | 873 | WP_033976386.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| H5J27_RS26995 (H5J27_26995) | coaE | 5695185..5695796 (+) | 612 | WP_033970460.1 | dephospho-CoA kinase | - |
| H5J27_RS27000 (H5J27_27000) | yacG | 5695793..5695993 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| H5J27_RS27005 (H5J27_27005) | - | 5696030..5696239 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| H5J27_RS27010 (H5J27_27010) | - | 5696345..5697034 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| H5J27_RS27015 (H5J27_27015) | - | 5697031..5697501 (-) | 471 | WP_033970459.1 | hypothetical protein | - |
| H5J27_RS27020 (H5J27_27020) | - | 5697498..5697923 (-) | 426 | WP_033976385.1 | GNAT family N-acetyltransferase | - |
| H5J27_RS27025 (H5J27_27025) | - | 5698056..5698685 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| H5J27_RS27030 (H5J27_27030) | - | 5698682..5699131 (+) | 450 | WP_033970456.1 | MOSC domain-containing protein | - |
| H5J27_RS27035 (H5J27_27035) | - | 5699157..5699327 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31825.86 Da Isoelectric Point: 7.7068
>NTDB_id=473129 H5J27_RS26990 WP_033976386.1 5694316..5695188(+) (pilD) [Pseudomonas aeruginosa strain NY3045]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=473129 H5J27_RS26990 WP_033976386.1 5694316..5695188(+) (pilD) [Pseudomonas aeruginosa strain NY3045]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAACCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAACCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |