Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   H5A01_RS01615 Genome accession   NZ_CP059964
Coordinates   315118..316299 (+) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain C1922C72     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310118..321299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS01590 (H5A01_01590) ctsR 310679..310990 (+) 312 WP_002880445.1 hypothetical protein Machinery gene
  H5A01_RS01595 (H5A01_01595) ctsD 310968..312380 (+) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H5A01_RS01600 (H5A01_01600) ctsP 312373..312981 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H5A01_RS01605 (H5A01_01605) ctsX 312985..313572 (+) 588 WP_126211804.1 transformation system protein Machinery gene
  H5A01_RS01610 (H5A01_01610) ctsE 313562..315121 (+) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  H5A01_RS01615 (H5A01_01615) ctsF 315118..316299 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H5A01_RS01620 (H5A01_01620) - 316292..317056 (-) 765 WP_002855821.1 TSUP family transporter -
  H5A01_RS01625 (H5A01_01625) - 317060..317825 (-) 766 Protein_323 TIGR02757 family protein -
  H5A01_RS01630 (H5A01_01630) flgK 317842..319668 (-) 1827 WP_002867029.1 flagellar hook-associated protein FlgK -
  H5A01_RS01635 (H5A01_01635) - 319678..320112 (-) 435 WP_002826016.1 flagellar protein FlgN -
  H5A01_RS01640 (H5A01_01640) flgM 320157..320354 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  H5A01_RS01645 (H5A01_01645) - 320417..320758 (-) 342 WP_002784057.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=472764 H5A01_RS01615 WP_002868229.1 315118..316299(+) (ctsF) [Campylobacter jejuni strain C1922C72]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=472764 H5A01_RS01615 WP_002868229.1 315118..316299(+) (ctsF) [Campylobacter jejuni strain C1922C72]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987