Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   H5A01_RS01590 Genome accession   NZ_CP059964
Coordinates   310679..310990 (+) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C1922C72     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305679..315990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS01580 (H5A01_01580) - 306361..307002 (+) 642 WP_052782179.1 HAD family hydrolase -
  H5A01_RS01585 (H5A01_01585) nifJ 307095..310655 (+) 3561 WP_002880446.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  H5A01_RS01590 (H5A01_01590) ctsR 310679..310990 (+) 312 WP_002880445.1 hypothetical protein Machinery gene
  H5A01_RS01595 (H5A01_01595) ctsD 310968..312380 (+) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H5A01_RS01600 (H5A01_01600) ctsP 312373..312981 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H5A01_RS01605 (H5A01_01605) ctsX 312985..313572 (+) 588 WP_126211804.1 transformation system protein Machinery gene
  H5A01_RS01610 (H5A01_01610) ctsE 313562..315121 (+) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=472759 H5A01_RS01590 WP_002880445.1 310679..310990(+) (ctsR) [Campylobacter jejuni strain C1922C72]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=472759 H5A01_RS01590 WP_002880445.1 310679..310990(+) (ctsR) [Campylobacter jejuni strain C1922C72]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981