Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   H5A01_RS01605 Genome accession   NZ_CP059964
Coordinates   312985..313572 (+) Length   195 a.a.
NCBI ID   WP_126211804.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C1922C72     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307985..318572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS01590 (H5A01_01590) ctsR 310679..310990 (+) 312 WP_002880445.1 hypothetical protein Machinery gene
  H5A01_RS01595 (H5A01_01595) ctsD 310968..312380 (+) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H5A01_RS01600 (H5A01_01600) ctsP 312373..312981 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H5A01_RS01605 (H5A01_01605) ctsX 312985..313572 (+) 588 WP_126211804.1 transformation system protein Machinery gene
  H5A01_RS01610 (H5A01_01610) ctsE 313562..315121 (+) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  H5A01_RS01615 (H5A01_01615) ctsF 315118..316299 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H5A01_RS01620 (H5A01_01620) - 316292..317056 (-) 765 WP_002855821.1 TSUP family transporter -
  H5A01_RS01625 (H5A01_01625) - 317060..317825 (-) 766 Protein_323 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23331.38 Da        Isoelectric Point: 9.8409

>NTDB_id=472762 H5A01_RS01605 WP_126211804.1 312985..313572(+) (ctsX) [Campylobacter jejuni strain C1922C72]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAAQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=472762 H5A01_RS01605 WP_126211804.1 312985..313572(+) (ctsX) [Campylobacter jejuni strain C1922C72]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGCGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

99.487

100

0.995