Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   H5A01_RS01600 Genome accession   NZ_CP059964
Coordinates   312373..312981 (+) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain C1922C72     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307373..317981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A01_RS01590 (H5A01_01590) ctsR 310679..310990 (+) 312 WP_002880445.1 hypothetical protein Machinery gene
  H5A01_RS01595 (H5A01_01595) ctsD 310968..312380 (+) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  H5A01_RS01600 (H5A01_01600) ctsP 312373..312981 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  H5A01_RS01605 (H5A01_01605) ctsX 312985..313572 (+) 588 WP_126211804.1 transformation system protein Machinery gene
  H5A01_RS01610 (H5A01_01610) ctsE 313562..315121 (+) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  H5A01_RS01615 (H5A01_01615) ctsF 315118..316299 (+) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  H5A01_RS01620 (H5A01_01620) - 316292..317056 (-) 765 WP_002855821.1 TSUP family transporter -
  H5A01_RS01625 (H5A01_01625) - 317060..317825 (-) 766 Protein_323 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=472761 H5A01_RS01600 WP_002851464.1 312373..312981(+) (ctsP) [Campylobacter jejuni strain C1922C72]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=472761 H5A01_RS01600 WP_002851464.1 312373..312981(+) (ctsP) [Campylobacter jejuni strain C1922C72]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995