Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H5A39_RS10160 Genome accession   NZ_CP059961
Coordinates   2225523..2226071 (+) Length   182 a.a.
NCBI ID   WP_012822379.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain IPO:4057 NAK:249     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2220523..2231071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A39_RS10145 (H5A39_10145) - 2221543..2222295 (+) 753 WP_012822376.1 TIGR03761 family integrating conjugative element protein -
  H5A39_RS10150 (H5A39_10150) - 2222310..2224319 (+) 2010 WP_109491853.1 DNA topoisomerase III -
  H5A39_RS10155 (H5A39_10155) - 2224954..2225463 (+) 510 WP_012822378.1 STY4534 family ICE replication protein -
  H5A39_RS10160 (H5A39_10160) ssb 2225523..2226071 (+) 549 WP_012822379.1 single-stranded DNA-binding protein Machinery gene
  H5A39_RS10165 (H5A39_10165) - 2226175..2226759 (+) 585 WP_102118383.1 hypothetical protein -
  H5A39_RS10170 (H5A39_10170) - 2226831..2227268 (+) 438 WP_012822381.1 DUF29 domain-containing protein -
  H5A39_RS10175 (H5A39_10175) - 2227419..2228762 (+) 1344 WP_102118382.1 TcpQ domain-containing protein -
  H5A39_RS10180 (H5A39_10180) pilM 2228762..2229208 (+) 447 WP_012822383.1 type IV pilus biogenesis protein PilM -
  H5A39_RS10185 (H5A39_10185) - 2229218..2230882 (+) 1665 WP_109491851.1 PilN family type IVB pilus formation outer membrane protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20077.40 Da        Isoelectric Point: 7.1665

>NTDB_id=472689 H5A39_RS10160 WP_012822379.1 2225523..2226071(+) (ssb) [Pectobacterium brasiliense strain IPO:4057 NAK:249]
MASRGVNKVTLIGFLGQDPEVRYMPNGNAVTGITMATSETWRDKQTGEEKERTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDSAGVDRWTTEIVVSQRGTMQMLGSRPNDGNNNQSAANTSWGKPQQPAAPAHSGTPQSQRPAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAVS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=472689 H5A39_RS10160 WP_012822379.1 2225523..2226071(+) (ssb) [Pectobacterium brasiliense strain IPO:4057 NAK:249]
ATGGCTTCACGTGGCGTAAATAAAGTAACACTTATCGGATTTTTGGGGCAGGATCCCGAAGTCCGTTATATGCCAAATGG
TAACGCAGTTACTGGTATTACTATGGCAACGTCAGAAACCTGGCGCGATAAACAAACTGGCGAAGAGAAAGAGCGTACTG
AATGGCACCGTGTGGTGATATTTGGCAAGCTTGCAGAAATTGCCGGAGAGTATTTGCGTAAAGGATCTCAGGTTTACATT
GAAGGGCAACTTCAAACACGTAAGTGGCAAGATAGTGCGGGTGTAGATCGTTGGACGACCGAAATTGTAGTCAGCCAGCG
TGGCACGATGCAGATGTTAGGATCTCGCCCGAACGACGGAAATAACAACCAAAGTGCGGCCAACACTTCATGGGGAAAAC
CTCAGCAGCCAGCAGCACCGGCACACAGTGGTACCCCTCAGTCTCAACGTCCAGCTGGCAATGAACCGCCGATGGATTTT
GACGACGACATACCGTTCCTGGGGTTTGGCTATGGCGTATGTCGTAAAGCGATTTATGCCGTTTCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.797

97.253

0.659
  ssb Glaesserella parasuis strain SC1401

50.829

99.451

0.505
  ssb Neisseria meningitidis MC58

46.591

96.703

0.451
  ssb Neisseria gonorrhoeae MS11

46.067

97.802

0.451