Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H5A39_RS09665 Genome accession   NZ_CP059961
Coordinates   2125109..2125657 (+) Length   182 a.a.
NCBI ID   WP_119871447.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain IPO:4057 NAK:249     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2110431..2126851 2125109..2125657 within 0


Gene organization within MGE regions


Location: 2110431..2126851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A39_RS09595 (H5A39_09595) - 2110431..2111453 (+) 1023 WP_127110981.1 IS110 family transposase -
  H5A39_RS09600 (H5A39_09600) - 2111676..2111791 (-) 116 Protein_1870 transposase -
  H5A39_RS09605 (H5A39_09605) - 2112283..2112648 (+) 366 WP_014914374.1 cyanovirin containing protein -
  H5A39_RS09610 (H5A39_09610) ccdA 2113069..2113284 (-) 216 WP_014914376.1 type II toxin-antitoxin system antitoxin CcdA -
  H5A39_RS09615 (H5A39_09615) - 2113751..2114653 (+) 903 WP_119871437.1 ParA family protein -
  H5A39_RS09620 (H5A39_09620) - 2114653..2115048 (+) 396 WP_119871438.1 hypothetical protein -
  H5A39_RS09625 (H5A39_09625) dnaB-PI 2115041..2116408 (+) 1368 WP_185893727.1 SPI-7-type island replicative DNA helicase -
  H5A39_RS09630 (H5A39_09630) - 2116408..2118138 (+) 1731 WP_119871440.1 ParB family protein -
  H5A39_RS09635 (H5A39_09635) - 2118458..2119051 (+) 594 WP_119871535.1 DUF2857 domain-containing protein -
  H5A39_RS09640 (H5A39_09640) - 2119060..2119314 (+) 255 WP_119871442.1 hypothetical protein -
  H5A39_RS09645 (H5A39_09645) - 2119497..2120693 (+) 1197 WP_119871443.1 STY4528 family pathogenicity island replication protein -
  H5A39_RS09650 (H5A39_09650) - 2121110..2121889 (+) 780 WP_119871444.1 TIGR03761 family integrating conjugative element protein -
  H5A39_RS09655 (H5A39_09655) - 2121889..2123919 (+) 2031 WP_119871445.1 DNA topoisomerase III -
  H5A39_RS09660 (H5A39_09660) - 2124547..2125044 (+) 498 WP_119871446.1 STY4534 family ICE replication protein -
  H5A39_RS09665 (H5A39_09665) ssb 2125109..2125657 (+) 549 WP_119871447.1 single-stranded DNA-binding protein Machinery gene
  H5A39_RS09670 (H5A39_09670) - 2125758..2126342 (+) 585 WP_127110949.1 hypothetical protein -
  H5A39_RS09675 (H5A39_09675) - 2126414..2126851 (+) 438 WP_119871449.1 DUF29 domain-containing protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19498.67 Da        Isoelectric Point: 6.0888

>NTDB_id=472688 H5A39_RS09665 WP_119871447.1 2125109..2125657(+) (ssb) [Pectobacterium brasiliense strain IPO:4057 NAK:249]
MASRGVNKVILIGHLGQDPEVRYMPNGGAVANITLATSDTWRDKQSGEQKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWADQAGVERYTTEIVVNVGGTLQMLGSRPNAGNNNQSAANTSWGTPQQPAAPSHSGTPQSPGPAGNEPPMDF
DDDIPFGPLGLSISNHGLYAIS

Nucleotide


Download         Length: 549 bp        

>NTDB_id=472688 H5A39_RS09665 WP_119871447.1 2125109..2125657(+) (ssb) [Pectobacterium brasiliense strain IPO:4057 NAK:249]
ATGGCTTCACGTGGAGTTAACAAAGTTATTCTAATTGGCCATCTTGGTCAGGATCCTGAAGTTCGCTATATGCCGAATGG
TGGGGCAGTAGCCAACATCACATTAGCGACTTCTGATACCTGGCGGGATAAGCAAAGTGGTGAACAAAAAGAGAAGACCG
AATGGCACCGTGTGGTGATTTTCGGGAAGCTCGCTGAGATCGCTGGCGAATATCTCCGTAAGGGATCTCAGGTTTACATT
GAAGGTTCATTACAAACGCGTAAATGGGCCGATCAGGCTGGTGTCGAACGCTATACGACAGAAATTGTCGTTAACGTTGG
CGGCACATTACAGATGCTGGGTTCTCGCCCTAACGCTGGAAATAACAACCAAAGTGCGGCGAATACGTCATGGGGGACAC
CACAGCAGCCAGCTGCACCATCACATAGTGGTACACCTCAGTCACCCGGTCCAGCAGGCAATGAACCGCCGATGGATTTT
GACGATGACATACCCTTTGGCCCGCTCGGTTTAAGTATTTCAAATCATGGGCTTTATGCCATTTCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.927

97.253

0.67
  ssb Glaesserella parasuis strain SC1401

50

100

0.505
  ssb Neisseria meningitidis MC58

47.458

97.253

0.462
  ssb Neisseria gonorrhoeae MS11

47.458

97.253

0.462