Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H5A40_RS02180 Genome accession   NZ_CP059959
Coordinates   475388..475930 (+) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium brasiliense strain IPO:4062 NAK:237     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 470388..480930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A40_RS02170 (H5A40_02170) - 470621..471574 (-) 954 WP_039549693.1 hydroxyacid dehydrogenase -
  H5A40_RS02175 (H5A40_02175) uvrA 472304..475138 (-) 2835 WP_205591877.1 excinuclease ABC subunit UvrA -
  H5A40_RS02180 (H5A40_02180) ssb 475388..475930 (+) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H5A40_RS02185 (H5A40_02185) - 476059..476901 (-) 843 WP_205544830.1 oxidoreductase -
  H5A40_RS02190 (H5A40_02190) - 477270..478279 (-) 1010 Protein_415 AraC family transcriptional regulator ligand-binding domain-containing protein -
  H5A40_RS02195 (H5A40_02195) - 478549..479004 (+) 456 WP_205591878.1 GNAT family N-acetyltransferase -
  H5A40_RS02200 (H5A40_02200) - 479066..479656 (+) 591 WP_205591879.1 hypothetical protein -
  H5A40_RS02205 (H5A40_02205) - 479777..480208 (-) 432 WP_205591880.1 carboxymuconolactone decarboxylase family protein -
  H5A40_RS02210 (H5A40_02210) - 480342..480779 (-) 438 WP_039283304.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=472635 H5A40_RS02180 WP_039283288.1 475388..475930(+) (ssb) [Pectobacterium brasiliense strain IPO:4062 NAK:237]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=472635 H5A40_RS02180 WP_039283288.1 475388..475930(+) (ssb) [Pectobacterium brasiliense strain IPO:4062 NAK:237]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAGCAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCGGCACAG
AACAGCGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461