Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | H5A30_RS00085 | Genome accession | NZ_CP059957 |
| Coordinates | 14792..15340 (-) | Length | 182 a.a. |
| NCBI ID | WP_012822379.1 | Uniprot ID | - |
| Organism | Pectobacterium brasiliense strain IPO:4071 NAK:240 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1372..36942 | 14792..15340 | within | 0 |
Gene organization within MGE regions
Location: 1372..36942
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5A30_RS00010 (H5A30_00010) | - | 1372..1671 (-) | 300 | WP_205530077.1 | phage tail protein | - |
| H5A30_RS00015 (H5A30_00015) | - | 1994..2392 (-) | 399 | WP_240342861.1 | phage tail protein | - |
| H5A30_RS00020 (H5A30_00020) | pilV | 2779..3579 (-) | 801 | Protein_3 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| H5A30_RS00025 (H5A30_00025) | - | 3593..4246 (-) | 654 | WP_102118375.1 | prepilin peptidase | - |
| H5A30_RS00030 (H5A30_00030) | - | 4243..4761 (-) | 519 | WP_102118376.1 | lytic transglycosylase domain-containing protein | - |
| H5A30_RS00035 (H5A30_00035) | - | 4770..5366 (-) | 597 | WP_012822390.1 | type 4 pilus major pilin | - |
| H5A30_RS00040 (H5A30_00040) | - | 5423..6589 (-) | 1167 | WP_109491850.1 | type II secretion system F family protein | - |
| H5A30_RS00045 (H5A30_00045) | - | 6592..8151 (-) | 1560 | WP_102118378.1 | ATPase, T2SS/T4P/T4SS family | - |
| H5A30_RS00050 (H5A30_00050) | pilP | 8151..8660 (-) | 510 | WP_102118379.1 | type IV pilus biogenesis protein PilP | - |
| H5A30_RS00055 (H5A30_00055) | pilO2 | 8657..9964 (-) | 1308 | WP_102118380.1 | type 4b pilus protein PilO2 | - |
| H5A30_RS00060 (H5A30_00060) | - | 9975..11639 (-) | 1665 | WP_109491851.1 | PilN family type IVB pilus formation outer membrane protein | - |
| H5A30_RS00065 (H5A30_00065) | pilM | 11649..12095 (-) | 447 | WP_012822383.1 | type IV pilus biogenesis protein PilM | - |
| H5A30_RS00070 (H5A30_00070) | - | 12095..13444 (-) | 1350 | WP_103157529.1 | TcpQ domain-containing protein | - |
| H5A30_RS00075 (H5A30_00075) | - | 13595..14032 (-) | 438 | WP_039512823.1 | DUF29 domain-containing protein | - |
| H5A30_RS00080 (H5A30_00080) | - | 14104..14688 (-) | 585 | WP_103157530.1 | hypothetical protein | - |
| H5A30_RS00085 (H5A30_00085) | ssb | 14792..15340 (-) | 549 | WP_012822379.1 | single-stranded DNA-binding protein | Machinery gene |
| H5A30_RS00090 (H5A30_00090) | - | 15400..15909 (-) | 510 | WP_012822378.1 | STY4534 family ICE replication protein | - |
| H5A30_RS00095 (H5A30_00095) | - | 16544..18553 (-) | 2010 | WP_109491853.1 | DNA topoisomerase III | - |
| H5A30_RS00100 (H5A30_00100) | - | 18568..19320 (-) | 753 | WP_107168173.1 | TIGR03761 family integrating conjugative element protein | - |
| H5A30_RS00105 (H5A30_00105) | - | 19815..21092 (-) | 1278 | WP_226888944.1 | STY4528 family pathogenicity island replication protein | - |
| H5A30_RS00110 (H5A30_00110) | - | 21092..21337 (-) | 246 | WP_125233391.1 | hypothetical protein | - |
| H5A30_RS00115 (H5A30_00115) | - | 21334..21531 (-) | 198 | WP_012822373.1 | hypothetical protein | - |
| H5A30_RS00120 (H5A30_00120) | - | 21528..21758 (-) | 231 | WP_012822372.1 | hypothetical protein | - |
| H5A30_RS00125 (H5A30_00125) | - | 21760..22341 (-) | 582 | WP_012822371.1 | DUF2857 domain-containing protein | - |
| H5A30_RS00130 (H5A30_00130) | - | 22447..23112 (-) | 666 | WP_012822369.1 | hypothetical protein | - |
| H5A30_RS00135 (H5A30_00135) | - | 23109..23348 (-) | 240 | WP_109491856.1 | TraR/DksA C4-type zinc finger protein | - |
| H5A30_RS00140 (H5A30_00140) | - | 23338..25062 (-) | 1725 | WP_109491857.1 | ParB family protein | - |
| H5A30_RS00145 (H5A30_00145) | dnaB-PI | 25062..26423 (-) | 1362 | WP_109491858.1 | SPI-7-type island replicative DNA helicase | - |
| H5A30_RS00150 (H5A30_00150) | - | 26416..26805 (-) | 390 | WP_125233392.1 | hypothetical protein | - |
| H5A30_RS00155 (H5A30_00155) | - | 26802..27689 (-) | 888 | WP_109491861.1 | ParA family protein | - |
| H5A30_RS00160 (H5A30_00160) | - | 27978..29240 (+) | 1263 | WP_119871150.1 | integrase arm-type DNA-binding domain-containing protein | - |
| H5A30_RS00165 (H5A30_00165) | - | 29356..29550 (-) | 195 | WP_044209559.1 | YlcI/YnfO family protein | - |
| H5A30_RS00170 (H5A30_00170) | - | 29736..30077 (+) | 342 | WP_119871225.1 | hypothetical protein | - |
| H5A30_RS00175 (H5A30_00175) | - | 30531..30881 (-) | 351 | WP_158586005.1 | hypothetical protein | - |
| H5A30_RS00180 (H5A30_00180) | mobC | 30974..31716 (+) | 743 | Protein_35 | MobC family replication-relaxation protein | - |
| H5A30_RS00185 (H5A30_00185) | ccdA | 31775..31993 (+) | 219 | WP_015855076.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| H5A30_RS00190 (H5A30_00190) | ccdB | 31996..32301 (+) | 306 | WP_119871147.1 | type II toxin-antitoxin system toxin CcdB | - |
| H5A30_RS00195 (H5A30_00195) | - | 32501..33343 (-) | 843 | WP_119871146.1 | DNA adenine methylase | - |
| H5A30_RS00200 (H5A30_00200) | - | 33429..35150 (-) | 1722 | WP_119871145.1 | AAA family ATPase | - |
| H5A30_RS00205 (H5A30_00205) | - | 35576..36070 (-) | 495 | WP_119871144.1 | GNAT family N-acetyltransferase | - |
| H5A30_RS00210 (H5A30_00210) | - | 36067..36360 (-) | 294 | WP_038921611.1 | DUF1778 domain-containing protein | - |
| H5A30_RS00215 (H5A30_00215) | - | 36700..36942 (-) | 243 | WP_072010299.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20077.40 Da Isoelectric Point: 7.1665
>NTDB_id=472581 H5A30_RS00085 WP_012822379.1 14792..15340(-) (ssb) [Pectobacterium brasiliense strain IPO:4071 NAK:240]
MASRGVNKVTLIGFLGQDPEVRYMPNGNAVTGITMATSETWRDKQTGEEKERTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDSAGVDRWTTEIVVSQRGTMQMLGSRPNDGNNNQSAANTSWGKPQQPAAPAHSGTPQSQRPAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAVS
MASRGVNKVTLIGFLGQDPEVRYMPNGNAVTGITMATSETWRDKQTGEEKERTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDSAGVDRWTTEIVVSQRGTMQMLGSRPNDGNNNQSAANTSWGKPQQPAAPAHSGTPQSQRPAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAVS
Nucleotide
Download Length: 549 bp
>NTDB_id=472581 H5A30_RS00085 WP_012822379.1 14792..15340(-) (ssb) [Pectobacterium brasiliense strain IPO:4071 NAK:240]
ATGGCTTCACGTGGCGTAAATAAAGTAACACTTATCGGATTTTTGGGGCAGGATCCCGAAGTCCGTTATATGCCAAATGG
TAACGCAGTTACTGGTATTACTATGGCAACGTCAGAAACCTGGCGCGATAAACAAACTGGCGAAGAGAAAGAGCGTACTG
AATGGCACCGTGTGGTGATATTTGGCAAGCTTGCAGAAATTGCCGGAGAGTATTTGCGTAAAGGATCTCAGGTTTACATT
GAAGGGCAACTTCAAACACGTAAGTGGCAAGATAGTGCGGGTGTAGATCGTTGGACGACCGAAATTGTAGTCAGCCAGCG
TGGCACGATGCAGATGTTAGGATCTCGCCCGAACGACGGAAATAACAACCAAAGTGCGGCCAACACTTCATGGGGAAAAC
CTCAGCAGCCAGCAGCACCGGCACACAGTGGTACCCCTCAGTCTCAACGTCCAGCTGGCAATGAACCGCCGATGGATTTT
GACGACGACATACCGTTCCTGGGGTTTGGCTATGGCGTATGTCGTAAAGCGATTTATGCCGTTTCTTAA
ATGGCTTCACGTGGCGTAAATAAAGTAACACTTATCGGATTTTTGGGGCAGGATCCCGAAGTCCGTTATATGCCAAATGG
TAACGCAGTTACTGGTATTACTATGGCAACGTCAGAAACCTGGCGCGATAAACAAACTGGCGAAGAGAAAGAGCGTACTG
AATGGCACCGTGTGGTGATATTTGGCAAGCTTGCAGAAATTGCCGGAGAGTATTTGCGTAAAGGATCTCAGGTTTACATT
GAAGGGCAACTTCAAACACGTAAGTGGCAAGATAGTGCGGGTGTAGATCGTTGGACGACCGAAATTGTAGTCAGCCAGCG
TGGCACGATGCAGATGTTAGGATCTCGCCCGAACGACGGAAATAACAACCAAAGTGCGGCCAACACTTCATGGGGAAAAC
CTCAGCAGCCAGCAGCACCGGCACACAGTGGTACCCCTCAGTCTCAACGTCCAGCTGGCAATGAACCGCCGATGGATTTT
GACGACGACATACCGTTCCTGGGGTTTGGCTATGGCGTATGTCGTAAAGCGATTTATGCCGTTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.797 |
97.253 |
0.659 |
| ssb | Glaesserella parasuis strain SC1401 |
50.829 |
99.451 |
0.505 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
96.703 |
0.451 |
| ssb | Neisseria gonorrhoeae MS11 |
46.067 |
97.802 |
0.451 |