Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H5A38_RS03820 Genome accession   NZ_CP059956
Coordinates   858855..859397 (-) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium brasiliense strain IPO:4132 NAK:239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 853855..864397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5A38_RS03790 (H5A38_03790) - 854100..855518 (-) 1419 WP_205546978.1 PLP-dependent aminotransferase family protein -
  H5A38_RS03795 (H5A38_03795) - 855610..856047 (+) 438 WP_205546977.1 GNAT family N-acetyltransferase -
  H5A38_RS03800 (H5A38_03800) - 856181..856612 (+) 432 WP_119872205.1 carboxymuconolactone decarboxylase family protein -
  H5A38_RS03805 (H5A38_03805) - 856733..857323 (-) 591 WP_205546976.1 hypothetical protein -
  H5A38_RS03810 (H5A38_03810) - 857385..857843 (-) 459 WP_205531910.1 GNAT family N-acetyltransferase -
  H5A38_RS03815 (H5A38_03815) - 858085..858699 (+) 615 WP_205546975.1 hypothetical protein -
  H5A38_RS03820 (H5A38_03820) ssb 858855..859397 (-) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  H5A38_RS03825 (H5A38_03825) - 859378..859572 (-) 195 WP_165572835.1 hypothetical protein -
  H5A38_RS03830 (H5A38_03830) uvrA 859647..862481 (+) 2835 WP_010279281.1 excinuclease ABC subunit UvrA -
  H5A38_RS03835 (H5A38_03835) - 863211..864164 (+) 954 WP_205546974.1 hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=472563 H5A38_RS03820 WP_039283288.1 858855..859397(-) (ssb) [Pectobacterium brasiliense strain IPO:4132 NAK:239]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=472563 H5A38_RS03820 WP_039283288.1 858855..859397(-) (ssb) [Pectobacterium brasiliense strain IPO:4132 NAK:239]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGCCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGCCCTGCACAG
AACAGCGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461