Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HUU81_RS02610 Genome accession   NZ_CP059888
Coordinates   591677..592570 (-) Length   297 a.a.
NCBI ID   WP_407644844.1    Uniprot ID   -
Organism   Flocculibacter collagenilyticus strain SM1988     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 586677..597570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUU81_RS02590 secA 586943..589657 (+) 2715 WP_199610722.1 preprotein translocase subunit SecA -
  HUU81_RS02595 yacG 589834..590094 (-) 261 WP_199610723.1 DNA gyrase inhibitor YacG -
  HUU81_RS02600 zapD 590173..590919 (-) 747 WP_199610724.1 cell division protein ZapD -
  HUU81_RS02605 coaE 591026..591649 (-) 624 WP_199610725.1 dephospho-CoA kinase -
  HUU81_RS02610 pilD 591677..592570 (-) 894 WP_407644844.1 prepilin peptidase Machinery gene
  HUU81_RS02615 pilC 592577..593803 (-) 1227 WP_199610727.1 type II secretion system F family protein Machinery gene
  HUU81_RS02620 pilB 593858..595546 (-) 1689 WP_199610728.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HUU81_RS17550 - 595684..596142 (-) 459 WP_407644831.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33252.59 Da        Isoelectric Point: 6.4677

>NTDB_id=472364 HUU81_RS02610 WP_407644844.1 591677..592570(-) (pilD) [Flocculibacter collagenilyticus strain SM1988]
MDNIITAFEHYPVFFYLLVFTFSLIIGSFLNVVVHRLPIMMEREWRCDCREFLADELTNEAKQKAKAESATYNLSVPRSA
CPKCNHQIKWYENIPVLSWLMLKGKCSQCNNPISFRYPFVELLTAVSSLAIALHFGVTELALIYILLTWCLISLIFIDID
KMLLPDQITIPLVWLGLITSLLGITIAPSEAIIGAAVGYLSLWSVFWLFKLATGKEGMGYGDFKLMAVFGAFLGWQMVPL
IVLLSSFVGAIVGITILTIQKKGASTPIPFGPYIAIAGWLAILYGDEITNTYFNLIL

Nucleotide


Download         Length: 894 bp        

>NTDB_id=472364 HUU81_RS02610 WP_407644844.1 591677..592570(-) (pilD) [Flocculibacter collagenilyticus strain SM1988]
ATAGATAATATAATCACTGCTTTTGAACACTATCCGGTTTTCTTTTATCTGCTAGTGTTCACCTTTTCACTTATAATAGG
AAGTTTCCTTAATGTAGTGGTGCACCGCTTACCAATCATGATGGAAAGAGAGTGGCGCTGTGATTGCCGTGAATTCTTGG
CCGATGAACTCACTAATGAAGCTAAGCAAAAAGCTAAGGCTGAATCAGCAACGTATAATTTGTCGGTACCGCGTTCAGCC
TGCCCAAAATGCAACCATCAAATAAAATGGTATGAAAATATTCCAGTACTTAGCTGGCTAATGCTGAAAGGAAAATGCAG
CCAGTGCAATAACCCTATTTCATTTAGGTACCCATTTGTAGAGCTGCTTACCGCAGTTAGCTCGCTAGCTATTGCCCTGC
ATTTTGGCGTAACCGAATTAGCACTCATATATATTTTATTAACGTGGTGTTTGATTAGCTTAATCTTCATCGATATTGAT
AAGATGCTTTTGCCAGATCAAATTACCATTCCACTTGTGTGGCTCGGTTTAATCACCAGCTTGCTAGGAATAACAATTGC
GCCAAGTGAAGCTATTATAGGGGCAGCAGTTGGTTACTTATCATTATGGTCTGTCTTTTGGTTATTTAAGCTAGCCACTG
GCAAAGAAGGTATGGGCTATGGTGACTTTAAGTTAATGGCTGTATTTGGCGCATTTTTAGGCTGGCAAATGGTTCCGTTA
ATCGTTTTATTATCATCATTTGTAGGCGCCATTGTTGGCATTACCATTTTAACGATTCAGAAAAAAGGCGCTAGCACACC
TATTCCTTTCGGACCTTATATTGCAATTGCAGGTTGGTTAGCGATTTTATATGGTGATGAAATTACAAACACCTATTTTA
ATCTAATCTTATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-135)

Type IV leader peptidase family (Peptidase_A24)

(146-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.125

96.97

0.515
  pilD Vibrio campbellii strain DS40M4

51.701

98.99

0.512
  pilD Acinetobacter nosocomialis M2

48.98

98.99

0.485
  pilD Acinetobacter baumannii D1279779

48.98

98.99

0.485
  pilD Neisseria gonorrhoeae MS11

42.435

91.246

0.387