Detailed information NTG0472365

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K26_RS05685
• Genome accession: NZ_CP070066
• Coordinates: 1195382..1196374 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1296
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1190382..1201374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K26_RS05655 (I6K26_05655)	ispD	1190443..1191153 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6K26_RS05660 (I6K26_05660)	ispF	1191153..1191632 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K26_RS05665 (I6K26_05665)	truD	1191629..1192678 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
I6K26_RS05670 (I6K26_05670)	surE	1192659..1193420 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K26_RS05675 (I6K26_05675)	pcm	1193414..1194040 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K26_RS05680 (I6K26_05680)	nlpD	1194225..1195319 (+)	1095	WP_306305124.1	murein hydrolase activator NlpD	-
I6K26_RS05685 (I6K26_05685)	rpoS	1195382..1196374 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K26_RS05690 (I6K26_05690)	-	1196552..1197103 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6K26_RS05695 (I6K26_05695)	-	1197328..1198371 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6K26_RS05700 (I6K26_05700)	ygbN	1198514..1199878 (-)	1365	WP_000104443.1	GntP family transporter	-
I6K26_RS05705 (I6K26_05705)	ygbM	1199967..1200743 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=472365 I6K26_RS05685 WP_000081550.1 1195382..1196374(+) (rpoS) [Escherichia coli strain FDAARGOS_1296]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=472365 I6K26_RS05685 WP_000081550.1 1195382..1196374(+) (rpoS) [Escherichia coli strain FDAARGOS_1296]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715