Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | HUU81_RS02615 | Genome accession | NZ_CP059888 |
| Coordinates | 592577..593803 (-) | Length | 408 a.a. |
| NCBI ID | WP_199610727.1 | Uniprot ID | - |
| Organism | Flocculibacter collagenilyticus strain SM1988 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 587577..598803
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUU81_RS02595 | yacG | 589834..590094 (-) | 261 | WP_199610723.1 | DNA gyrase inhibitor YacG | - |
| HUU81_RS02600 | zapD | 590173..590919 (-) | 747 | WP_199610724.1 | cell division protein ZapD | - |
| HUU81_RS02605 | coaE | 591026..591649 (-) | 624 | WP_199610725.1 | dephospho-CoA kinase | - |
| HUU81_RS02610 | pilD | 591677..592570 (-) | 894 | WP_407644844.1 | prepilin peptidase | Machinery gene |
| HUU81_RS02615 | pilC | 592577..593803 (-) | 1227 | WP_199610727.1 | type II secretion system F family protein | Machinery gene |
| HUU81_RS02620 | pilB | 593858..595546 (-) | 1689 | WP_199610728.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HUU81_RS17550 | - | 595684..596142 (-) | 459 | WP_407644831.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| HUU81_RS02630 | nadC | 596836..597681 (-) | 846 | WP_199610729.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HUU81_RS02635 | - | 597704..598219 (-) | 516 | WP_199610730.1 | TIGR02281 family clan AA aspartic protease | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44113.71 Da Isoelectric Point: 9.0101
>NTDB_id=472365 HUU81_RS02615 WP_199610727.1 592577..593803(-) (pilC) [Flocculibacter collagenilyticus strain SM1988]
MATTKIKEPAVYLWEGVNRRGNKVKGEIRGSSSLEVKAQLRKQSIIPSKVKKQPKSLFGTSGEKKLKPADIAVITRQIAT
MLAAGVPLVQTIEMIGSGAENKAVTTLMGQINLKVSAGTPLSEALKDHPRYFDDLYCDLVKSGEQSGALDRIFDRIALYK
EKAEALKSKIKKAMFYPVAVLIIAGIVTSVLLIFVVPQFAEIFAGFGAELPAFTQFVLGISETMQEYWWIVLATLVGGGY
LFGYTKRKNKAFSDKVDAMILKLPIVGNILDKAAVARYARTLSTTFAAGVPLVEALDSAAGASGNAVYRDAINEVKTEVS
SGNQMNYAMKHTNVFPDMVCQMVAIGEEAGSIDSMLDKVANVYEQEVDDAVDGLTSLIEPLLMAVLGVIIGGLIIAMYLP
IFNMGKII
MATTKIKEPAVYLWEGVNRRGNKVKGEIRGSSSLEVKAQLRKQSIIPSKVKKQPKSLFGTSGEKKLKPADIAVITRQIAT
MLAAGVPLVQTIEMIGSGAENKAVTTLMGQINLKVSAGTPLSEALKDHPRYFDDLYCDLVKSGEQSGALDRIFDRIALYK
EKAEALKSKIKKAMFYPVAVLIIAGIVTSVLLIFVVPQFAEIFAGFGAELPAFTQFVLGISETMQEYWWIVLATLVGGGY
LFGYTKRKNKAFSDKVDAMILKLPIVGNILDKAAVARYARTLSTTFAAGVPLVEALDSAAGASGNAVYRDAINEVKTEVS
SGNQMNYAMKHTNVFPDMVCQMVAIGEEAGSIDSMLDKVANVYEQEVDDAVDGLTSLIEPLLMAVLGVIIGGLIIAMYLP
IFNMGKII
Nucleotide
Download Length: 1227 bp
>NTDB_id=472365 HUU81_RS02615 WP_199610727.1 592577..593803(-) (pilC) [Flocculibacter collagenilyticus strain SM1988]
ATGGCAACAACCAAAATAAAAGAGCCAGCAGTCTATCTTTGGGAAGGTGTAAACCGCCGAGGCAACAAAGTTAAAGGCGA
AATTCGCGGTAGCTCTTCACTAGAAGTAAAAGCGCAATTACGCAAACAATCAATTATTCCGAGTAAAGTAAAAAAACAGC
CTAAATCTTTGTTTGGTACATCGGGTGAAAAGAAATTAAAACCTGCAGATATCGCCGTAATTACCCGTCAAATAGCCACC
ATGCTAGCTGCAGGTGTGCCCTTAGTTCAAACAATTGAAATGATTGGTTCAGGTGCAGAAAATAAAGCAGTAACCACTTT
AATGGGACAAATTAACTTGAAAGTTTCTGCTGGTACCCCCTTATCTGAAGCATTAAAAGATCACCCTCGATATTTTGACG
ATTTATACTGCGATTTAGTTAAATCTGGTGAGCAATCAGGTGCTCTTGACCGCATTTTTGATCGAATCGCATTGTATAAA
GAAAAAGCTGAAGCATTGAAATCAAAGATTAAAAAAGCGATGTTTTACCCTGTCGCTGTTTTAATAATTGCAGGTATTGT
AACTTCTGTTCTTTTAATTTTTGTAGTACCTCAATTTGCTGAAATTTTTGCAGGTTTTGGTGCAGAGCTTCCTGCATTTA
CCCAATTTGTCTTAGGTATTTCAGAAACCATGCAGGAATATTGGTGGATTGTATTAGCAACGCTAGTCGGTGGAGGGTAT
CTCTTCGGCTATACGAAAAGAAAAAATAAAGCATTCAGTGATAAAGTTGATGCCATGATCCTTAAGCTTCCTATTGTTGG
TAACATTTTAGATAAAGCGGCAGTTGCACGTTATGCCAGAACCTTGTCCACTACATTTGCTGCGGGTGTCCCCCTTGTCG
AAGCACTCGATTCAGCAGCTGGCGCATCCGGTAATGCCGTTTATCGAGACGCTATTAATGAGGTTAAAACAGAAGTTTCT
TCAGGTAATCAAATGAACTATGCAATGAAACATACTAACGTTTTTCCAGATATGGTTTGCCAAATGGTGGCTATCGGTGA
AGAGGCGGGCTCTATAGACTCAATGCTGGATAAAGTTGCAAACGTCTATGAACAAGAGGTGGATGATGCCGTTGATGGCC
TTACAAGCTTAATTGAGCCACTATTGATGGCTGTGTTAGGTGTCATCATTGGTGGATTAATCATTGCCATGTATCTACCT
ATCTTTAACATGGGTAAAATTATTTAA
ATGGCAACAACCAAAATAAAAGAGCCAGCAGTCTATCTTTGGGAAGGTGTAAACCGCCGAGGCAACAAAGTTAAAGGCGA
AATTCGCGGTAGCTCTTCACTAGAAGTAAAAGCGCAATTACGCAAACAATCAATTATTCCGAGTAAAGTAAAAAAACAGC
CTAAATCTTTGTTTGGTACATCGGGTGAAAAGAAATTAAAACCTGCAGATATCGCCGTAATTACCCGTCAAATAGCCACC
ATGCTAGCTGCAGGTGTGCCCTTAGTTCAAACAATTGAAATGATTGGTTCAGGTGCAGAAAATAAAGCAGTAACCACTTT
AATGGGACAAATTAACTTGAAAGTTTCTGCTGGTACCCCCTTATCTGAAGCATTAAAAGATCACCCTCGATATTTTGACG
ATTTATACTGCGATTTAGTTAAATCTGGTGAGCAATCAGGTGCTCTTGACCGCATTTTTGATCGAATCGCATTGTATAAA
GAAAAAGCTGAAGCATTGAAATCAAAGATTAAAAAAGCGATGTTTTACCCTGTCGCTGTTTTAATAATTGCAGGTATTGT
AACTTCTGTTCTTTTAATTTTTGTAGTACCTCAATTTGCTGAAATTTTTGCAGGTTTTGGTGCAGAGCTTCCTGCATTTA
CCCAATTTGTCTTAGGTATTTCAGAAACCATGCAGGAATATTGGTGGATTGTATTAGCAACGCTAGTCGGTGGAGGGTAT
CTCTTCGGCTATACGAAAAGAAAAAATAAAGCATTCAGTGATAAAGTTGATGCCATGATCCTTAAGCTTCCTATTGTTGG
TAACATTTTAGATAAAGCGGCAGTTGCACGTTATGCCAGAACCTTGTCCACTACATTTGCTGCGGGTGTCCCCCTTGTCG
AAGCACTCGATTCAGCAGCTGGCGCATCCGGTAATGCCGTTTATCGAGACGCTATTAATGAGGTTAAAACAGAAGTTTCT
TCAGGTAATCAAATGAACTATGCAATGAAACATACTAACGTTTTTCCAGATATGGTTTGCCAAATGGTGGCTATCGGTGA
AGAGGCGGGCTCTATAGACTCAATGCTGGATAAAGTTGCAAACGTCTATGAACAAGAGGTGGATGATGCCGTTGATGGCC
TTACAAGCTTAATTGAGCCACTATTGATGGCTGTGTTAGGTGTCATCATTGGTGGATTAATCATTGCCATGTATCTACCT
ATCTTTAACATGGGTAAAATTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57.598 |
100 |
0.576 |
| pilC | Acinetobacter baylyi ADP1 |
50.976 |
100 |
0.512 |
| pilC | Acinetobacter baumannii D1279779 |
49.755 |
100 |
0.498 |
| pilC | Legionella pneumophila strain ERS1305867 |
50.761 |
96.569 |
0.49 |
| pilC | Vibrio cholerae strain A1552 |
43.75 |
98.039 |
0.429 |
| pilG | Neisseria gonorrhoeae MS11 |
41.728 |
99.265 |
0.414 |
| pilG | Neisseria meningitidis 44/76-A |
41.935 |
98.775 |
0.414 |
| pilC | Vibrio campbellii strain DS40M4 |
41.147 |
98.284 |
0.404 |
| pilC | Thermus thermophilus HB27 |
37.778 |
99.265 |
0.375 |