Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H4P35_RS26490 Genome accession   NZ_CP059848
Coordinates   5735645..5736163 (-) Length   172 a.a.
NCBI ID   WP_062838810.1    Uniprot ID   -
Organism   Achromobacter sp. 77     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5730645..5741163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4P35_RS26475 (H4P35_26420) - 5731074..5732057 (-) 984 WP_226847588.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  H4P35_RS26480 (H4P35_26425) - 5732054..5734489 (-) 2436 WP_226847589.1 YfhO family protein -
  H4P35_RS26485 (H4P35_26430) - 5734528..5735211 (-) 684 WP_255616245.1 glycosyltransferase family 2 protein -
  H4P35_RS26490 (H4P35_26435) ssb 5735645..5736163 (-) 519 WP_062838810.1 single-stranded DNA-binding protein Machinery gene
  H4P35_RS26495 (H4P35_26440) - 5736459..5737643 (-) 1185 WP_056327097.1 MFS transporter -
  H4P35_RS26500 (H4P35_26445) uvrA 5737881..5740736 (+) 2856 WP_179690679.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18463.48 Da        Isoelectric Point: 5.9656

>NTDB_id=472219 H4P35_RS26490 WP_062838810.1 5735645..5736163(-) (ssb) [Achromobacter sp. 77]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSSWKDKASGEKREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPRQQRAAPAQRPAPQQRPAAPAAAPASSG
ANLADMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=472219 H4P35_RS26490 WP_062838810.1 5735645..5736163(-) (ssb) [Achromobacter sp. 77]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCGGC
AATCTGCAACATGTCGATCGCCACGACCTCGTCCTGGAAGGACAAGGCCAGCGGCGAAAAGCGCGAAGAAACCGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAGAAAGGCCGCTCGGTCTACATCGAAGGC
CGCCTCAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCCGACCGCTACAGCACCGAAATCGTCGCTGACCAGATGCA
AATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGGCAGCTACGGTGGCGGTGGCGGCTACGACGACGCCCCGCGCC
AGCAACGCGCCGCCCCGGCGCAGCGCCCCGCGCCCCAGCAGCGCCCGGCGGCTCCCGCAGCGGCCCCGGCCAGCAGCGGC
GCCAATCTGGCGGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.747

100

0.558
  ssb Glaesserella parasuis strain SC1401

50.802

100

0.552
  ssb Neisseria meningitidis MC58

51.136

100

0.523
  ssb Neisseria gonorrhoeae MS11

51.136

100

0.523