Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H2O77_RS16850 Genome accession   NZ_CP059843
Coordinates   4109557..4110213 (-) Length   218 a.a.
NCBI ID   WP_131432841.1    Uniprot ID   -
Organism   Cobetia sp. 4B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4104557..4115213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2O77_RS16835 (H2O77_16825) - 4104877..4105596 (-) 720 WP_215823595.1 lysophospholipid acyltransferase family protein -
  H2O77_RS16840 (H2O77_16830) - 4105657..4106541 (-) 885 WP_043334814.1 sugar nucleotide-binding protein -
  H2O77_RS16845 (H2O77_16835) - 4106604..4109111 (-) 2508 WP_215823596.1 EAL domain-containing protein -
  H2O77_RS16850 (H2O77_16840) ssb 4109557..4110213 (-) 657 WP_131432841.1 single-stranded DNA-binding protein Machinery gene
  H2O77_RS16855 (H2O77_16845) - 4110301..4111716 (-) 1416 WP_215823597.1 MFS transporter -
  H2O77_RS16860 (H2O77_16850) uvrA 4111924..4114803 (+) 2880 WP_215823598.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23556.55 Da        Isoelectric Point: 5.2339

>NTDB_id=472201 H2O77_RS16850 WP_131432841.1 4109557..4110213(-) (ssb) [Cobetia sp. 4B]
MARGVNKVILIGNLGQDPEVRFTPSGSAVCNLNLATTDTWNDRQSGQRQERTEWHRVVMFNKLAEVAQQYVKKGSRLYIE
GRLQTRKWQDQNGNDRYSTEIVANDMQMLDTRGEGGGGNFAGGRPQQAPQQGGQQPAAAPQQGGQFGGQQPAPQQGGQFG
GQQPAPQQGGQFGGQQPAPQQGNNFGGQQPAQQNNSQNNNFGAPPAGSFDDFDDEIPF

Nucleotide


Download         Length: 657 bp        

>NTDB_id=472201 H2O77_RS16850 WP_131432841.1 4109557..4110213(-) (ssb) [Cobetia sp. 4B]
ATGGCTCGTGGCGTAAACAAGGTCATTCTGATCGGTAATCTCGGTCAAGACCCGGAAGTTCGCTTCACCCCGTCCGGTAG
TGCGGTGTGCAACCTGAACCTCGCGACGACGGACACCTGGAATGATCGCCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGTGTGGTGATGTTCAACAAGCTGGCTGAAGTGGCCCAGCAATACGTCAAGAAAGGCTCACGCCTGTATATCGAA
GGCCGCCTGCAGACGCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTACAGCACAGAAATCGTGGCCAACGACATGCA
GATGCTGGATACGCGTGGTGAAGGTGGCGGCGGCAACTTCGCTGGTGGTCGCCCGCAGCAGGCGCCTCAGCAGGGCGGCC
AGCAACCGGCCGCAGCCCCCCAGCAGGGTGGCCAGTTCGGTGGTCAGCAGCCGGCCCCGCAGCAAGGTGGCCAGTTCGGT
GGTCAGCAGCCGGCCCCTCAGCAAGGCGGTCAGTTCGGTGGTCAGCAGCCGGCACCTCAGCAGGGCAACAACTTCGGTGG
CCAGCAGCCTGCCCAGCAGAACAACTCCCAGAACAACAATTTCGGTGCGCCGCCCGCGGGCAGCTTCGATGATTTCGATG
ATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.091

100

0.495
  ssb Glaesserella parasuis strain SC1401

44.545

100

0.45
  ssb Neisseria meningitidis MC58

43.056

99.083

0.427
  ssb Neisseria gonorrhoeae MS11

42.791

98.624

0.422