Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H2513_RS06435 Genome accession   NZ_CP059704
Coordinates   1411355..1411855 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain RCAD0730     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1406355..1416855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2513_RS06420 (H2513_06400) rlmB 1406898..1407635 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H2513_RS06425 (H2513_06405) sodC 1407721..1408281 (-) 561 WP_316729398.1 superoxide dismutase [Cu-Zn] SodC -
  H2513_RS06430 (H2513_06410) uvrA 1408352..1411183 (-) 2832 WP_316729399.1 excinuclease ABC subunit UvrA -
  H2513_RS06435 (H2513_06415) ssb 1411355..1411855 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  H2513_RS06440 (H2513_06420) - 1412005..1413285 (+) 1281 WP_016533798.1 site-specific integrase -
  H2513_RS06445 (H2513_06425) - 1413272..1414792 (+) 1521 WP_010907418.1 site-specific integrase -
  H2513_RS06450 (H2513_06430) - 1414795..1416831 (+) 2037 WP_010907417.1 integrase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=471475 H2513_RS06435 WP_005725039.1 1411355..1411855(+) (ssb) [Pasteurella multocida strain RCAD0730]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=471475 H2513_RS06435 WP_005725039.1 1411355..1411855(+) (ssb) [Pasteurella multocida strain RCAD0730]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGG
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47