Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H3M14_RS02075 Genome accession   NZ_CP059697
Coordinates   408666..409178 (-) Length   170 a.a.
NCBI ID   WP_011373726.1    Uniprot ID   A0A094Y4Q3
Organism   Latilactobacillus sakei strain CBA3635     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 403666..414178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3M14_RS02055 (H3M14_02055) dnaB 404144..405541 (-) 1398 WP_016264316.1 replicative DNA helicase -
  H3M14_RS02060 (H3M14_02060) rplI 405672..406124 (-) 453 WP_011373728.1 50S ribosomal protein L9 -
  H3M14_RS02065 (H3M14_02065) - 406145..408178 (-) 2034 WP_016264315.1 DHH family phosphoesterase -
  H3M14_RS02070 (H3M14_02070) rpsR 408396..408635 (-) 240 WP_004265822.1 30S ribosomal protein S18 -
  H3M14_RS02075 (H3M14_02075) ssb 408666..409178 (-) 513 WP_011373726.1 single-stranded DNA-binding protein Machinery gene
  H3M14_RS02080 (H3M14_02080) rpsF 409217..409513 (-) 297 WP_011373725.1 30S ribosomal protein S6 -
  H3M14_RS02085 (H3M14_02085) gyrA 409750..412323 (-) 2574 WP_016264314.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18610.19 Da        Isoelectric Point: 4.6856

>NTDB_id=471385 H3M14_RS02075 WP_011373726.1 408666..409178(-) (ssb) [Latilactobacillus sakei strain CBA3635]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSMAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQTGNAPAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=471385 H3M14_RS02075 WP_011373726.1 408666..409178(-) (ssb) [Latilactobacillus sakei strain CBA3635]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATGGCAGTTAACCGTCAATTCACGAACGCTAACGGCGATCGTGAAGCAGACTTTATTAATTGTGTCATTT
GGCGTAAATCAGCGGAAAATTTCGCTAACTTTACTAAAAAGGGCTCATTAGTAGGGGTTGATGGCCGTCTACAAACTAGA
AATTATGAAAATCAACAAGGTCAACGTGTCTACGTGACTGAAGTGGTTGTCGATAATTTCTCATTGTTAGAATCACGGAC
AACAACAGAGCAACGGCAAGGTGATGGCGCAAGTCAGAACTTTAATAGTAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAAACGGGTAACGCACCAGCCGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCG
ATTGATATTTCGGATGATGACTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A094Y4Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssb Glaesserella parasuis strain SC1401

33.69

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371