Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ABD1_RS15370 Genome accession   NC_020547
Coordinates   3245844..3247889 (+) Length   681 a.a.
NCBI ID   WP_000204943.1    Uniprot ID   -
Organism   Acinetobacter baumannii D1279779     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3240844..3252889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD1_RS15355 (ABD1_29770) plsB 3241328..3243898 (+) 2571 WP_000045410.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  ABD1_RS15360 (ABD1_29780) adeT2 3243942..3244928 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  ABD1_RS15365 (ABD1_29790) - 3245008..3245823 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  ABD1_RS15370 (ABD1_29800) recG 3245844..3247889 (+) 2046 WP_000204943.1 ATP-dependent DNA helicase RecG Machinery gene
  ABD1_RS15375 (ABD1_29810) comF 3247882..3248517 (+) 636 WP_000472269.1 ComF family protein Machinery gene
  ABD1_RS15380 (ABD1_29820) - 3248520..3248921 (-) 402 WP_000849705.1 NUDIX hydrolase -
  ABD1_RS15385 (ABD1_29830) - 3248936..3249517 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  ABD1_RS15390 (ABD1_29840) - 3249675..3250688 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  ABD1_RS15395 (ABD1_29850) - 3250758..3251045 (-) 288 WP_000250997.1 STAS domain-containing protein -
  ABD1_RS15400 (ABD1_29860) - 3251057..3251698 (-) 642 WP_001093907.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ABD1_RS15405 (ABD1_29870) - 3251725..3252405 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76481.10 Da        Isoelectric Point: 7.7343

>NTDB_id=47132 ABD1_RS15370 WP_000204943.1 3245844..3247889(+) (recG) [Acinetobacter baumannii D1279779]
MTSVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLMVGRSYLLEGEVKSVDFPPGKRKSMAALIQD
EFGKVTLRFYHIYKNLTDKIKPGNRLRIFGEVRIGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVK
QALKHHSDALPELLPKQYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPA
FPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEADWQVALMAPTEILA
EQHYLNFKRWFEPLGITVAWLSGKQKGKARAHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGAEQLTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCREGKQAYWVCTL
VEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNELQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKPPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLE
RDDHLLSQAHYVAQQVLKDYPEQADALLKRWLPEAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=47132 ABD1_RS15370 WP_000204943.1 3245844..3247889(+) (recG) [Acinetobacter baumannii D1279779]
ATGACTTCAGTCCATCAGTTACAAGGCGTTGGATCGGCTTCAGCAGCCCTACTCGAAAAACTAAATATTTTTACCACAGA
TGATTTGCTGTTTCATCTGCCCCGTGATTATGAAGATCGCAGTACCATTATTCCTATGAATCAATTGATGGTTGGTCGTA
GTTATTTACTCGAGGGTGAAGTCAAATCTGTTGATTTCCCTCCAGGTAAACGTAAATCTATGGCCGCATTAATACAAGAT
GAATTTGGTAAGGTGACTTTACGCTTTTATCATATTTATAAAAATTTAACCGACAAAATAAAACCTGGTAACCGTTTACG
TATTTTTGGTGAAGTTCGTATAGGTGCACGAGGACTTGAGCTTTATCATCCAGAAATTCAACTTATTAATGAACATACCC
CCCTTCCAAAAACGCAGCTCACAGCAATTTATCCAAGTACCGATGGACTAACACAAGCTAAATTACGCGAATATGTTAAA
CAAGCGTTGAAGCATCATAGTGATGCCTTACCCGAGTTACTCCCTAAACAATATACAAATGGGTATGCACTCAAAGAAGC
TTTACATTACATTCATGAGCCGCCAGTTGATGCCAATATGATCCAATTGGCTCAAGGCTCTCATCCTGCGCAGCAACGTC
TTATTTTTGAAGAGCTGGTCGCACATCAAATTAGTCTTCTCACTCGACGTGCTTATATTCGTCAAATTGCTTCACCTGCT
TTTCCGAGTAGTAAAGTGCTTGCAAAAAAGCTGCTAGAAGCTTTACCTTTTCAAATGACCAACGCACAAAAACGTGTATC
AAAAGAAATTTTAAACGACTTAAAACAACATCAACCTATGCTGCGTTTGGTACAAGGTGATGTAGGGGCTGGAAAAACTT
TAGTTGCAGCGGTTGCAGCATGTCACGCATTAGAAGCAGATTGGCAAGTTGCGTTAATGGCACCCACCGAAATTTTAGCA
GAGCAGCATTATTTAAATTTTAAACGCTGGTTTGAACCTTTAGGTATTACGGTAGCTTGGTTGTCGGGTAAACAAAAAGG
GAAAGCGCGGGCACACGCTGAGCAACAAATTAAAGAAGGCCATGCTGAACTGATTGTGGGTACTCATGCCTTATTTCAAG
ATAACGTTGAGTTTGCAAAACTAGGACTCGTGATTATTGATGAGCAGCACCGATTCGGGGTCGATCAACGATTAGCCTTA
CGTAATAAAGGCGCCGAACAGCTCACCCCACATCAACTGGTCATGACTGCAACGCCAATTCCTAGAACACTGGCAATGAG
TGCTTATGGCGATTTAGATACATCGATTATTGATGAATTACCCCCAGGCCGAACTCCAATTCAGACCGTCACGATTCCGC
TAGATCGTCGTGAAGAAGTACTGCATCGAATTGCTTCAAACTGCCGAGAAGGCAAACAGGCCTACTGGGTATGTACTCTG
GTCGAACAGTCCGAAACTTTAGATGCTCAAGCCGCCGAAGCCACCTATCAAGAAATGAAAGAGCGCTTTCCTGAACTTAA
TATTGGTTTGGTTCATGGCAAAATGAAAGCCGATGAAAAACAGGCTGTCATGCAAGCATTTAAAAACAATGAACTACAAC
TACTAATTGCCACAACCGTTATTGAGGTTGGGGTAGATGTACCTAACGCTTCGATTATGGTCATTGAGAATGCTGAACGA
TTAGGGCTTTCACAGCTACACCAATTACGAGGTCGTGTAGGACGAGGTGCAAAAGCCAGTTTTTGCGTTCTTCTCTATAA
ACCACCACTTTCACAAAATGGGCAAGAAAGACTTTCAATTTTAAGAGAAAGTAATGATGGCTTTGTTATTGCTGAAAAAG
ATCTTGAGCTAAGGGGCCCGGGTGAGTTATTAGGAACAAAACAAACAGGTGATATGGGTTTCCGTGTCGCACGTTTAGAG
CGAGATGATCATTTATTGAGTCAAGCACACTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGATGCCTT
ATTGAAGCGCTGGCTTCCTGAAGCTCCTCGATACGCATATGTTTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(7-163)

Helicase conserved C-terminal domain (Helicase_C)

(466-576)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

DEAD/DEAH box helicase (DEAD)

(262-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.925

98.238

0.49
  recG/mmsA Streptococcus pneumoniae R6

41.504

97.651

0.405
  recG/mmsA Streptococcus pneumoniae R36A

41.504

97.651

0.405
  recG Bacillus subtilis subsp. subtilis str. 168

38.574

100

0.389

Multiple sequence alignment