Detailed information NTG0471163

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: IXO221_RS17545
• Genome accession: NZ_CP059591
• Coordinates: 3770596..3771654 (-)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain IXO221
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3765596..3776654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IXO221_RS17515 (IXO221_017515)	pilQ	3765597..3766514 (-)	918	Protein_3361	type IV pilus secretin PilQ	-
IXO221_RS17520 (IXO221_017520)	-	3766534..3767496 (-)	963	WP_011409552.1	IS1595-like element ISXo2 family transposase	-
IXO221_RS17525 (IXO221_017525)	-	3767566..3768626 (-)	1061	Protein_3363	AMIN domain-containing protein	-
IXO221_RS17530 (IXO221_017530)	-	3768646..3769179 (-)	534	WP_011257996.1	pilus assembly protein PilP	-
IXO221_RS17535 (IXO221_017535)	-	3769176..3769841 (-)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
IXO221_RS17540 (IXO221_017540)	-	3769838..3770596 (-)	759	WP_011257994.1	PilN domain-containing protein	-
IXO221_RS17545 (IXO221_017545)	comM	3770596..3771654 (-)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
IXO221_RS17550 (IXO221_017550)	-	3771870..3774299 (+)	2430	WP_011257992.1	penicillin-binding protein 1A	-
IXO221_RS17555 (IXO221_017555)	-	3774609..3775259 (+)	651	WP_011407794.1	hypothetical protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=471163 IXO221_RS17545 WP_011407795.1 3770596..3771654(-) (comM) [Xanthomonas oryzae pv. oryzae strain IXO221]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=471163 IXO221_RS17545 WP_011407795.1 3770596..3771654(-) (comM) [Xanthomonas oryzae pv. oryzae strain IXO221]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477