Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IXO685_RS17735 Genome accession   NZ_CP059590
Coordinates   3721100..3722551 (-) Length   483 a.a.
NCBI ID   WP_011258365.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain IXO685     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3712574..3727402 3721100..3722551 within 0


Gene organization within MGE regions


Location: 3712574..3727402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXO685_RS17690 (IXO685_0017685) pilC 3712574..3713833 (-) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  IXO685_RS17695 (IXO685_0017690) pilA2 3714188..3714613 (+) 426 WP_011408068.1 pilin Machinery gene
  IXO685_RS17700 (IXO685_0017695) - 3714748..3716337 (+) 1590 WP_075244420.1 phosphoethanolamine transferase -
  IXO685_RS17705 (IXO685_0017700) - 3716408..3716977 (+) 570 WP_229001934.1 hypothetical protein -
  IXO685_RS17710 (IXO685_0017705) - 3716947..3718473 (+) 1527 WP_041182621.1 membrane protein -
  IXO685_RS17715 (IXO685_0017710) pilB 3718508..3720241 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IXO685_RS17720 (IXO685_0017715) - 3720250..3720597 (-) 348 WP_305954854.1 Fic family protein -
  IXO685_RS17725 - 3720598..3720759 (-) 162 WP_153296778.1 hypothetical protein -
  IXO685_RS17730 (IXO685_0017720) - 3720821..3721027 (-) 207 WP_027703281.1 YhfG family protein -
  IXO685_RS17735 (IXO685_0017725) pilR 3721100..3722551 (-) 1452 WP_011258365.1 sigma-54 dependent transcriptional regulator Regulator
  IXO685_RS17740 (IXO685_0017730) - 3722822..3724435 (-) 1614 WP_012444444.1 HAMP domain-containing sensor histidine kinase -
  IXO685_RS17745 (IXO685_0017735) sucC 3724669..3725838 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  IXO685_RS17750 (IXO685_0017740) sucD 3725863..3726738 (+) 876 WP_012444445.1 succinate--CoA ligase subunit alpha -
  IXO685_RS17755 (IXO685_0017745) - 3726911..3727402 (+) 492 WP_027703282.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52462.22 Da        Isoelectric Point: 6.8290

>NTDB_id=471143 IXO685_RS17735 WP_011258365.1 3721100..3722551(-) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO685]
MRRAPLDNCRLSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=471143 IXO685_RS17735 WP_011258365.1 3721100..3722551(-) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO685]
TTGCGCCGCGCCCCACTCGACAATTGTCGACTATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462