Detailed information NTG0047112

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: KHP_RS06585
• Genome accession: NC_017382
• Coordinates: 1350502..1351638 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045729.1
• Uniprot ID: -
• Organism: Helicobacter pylori 51
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1345502..1356638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHP_RS06565 (KHP_1236)	hypE	1345687..1346685 (+)	999	WP_000378804.1	hydrogenase expression/formation protein HypE	-
KHP_RS06570 (KHP_1237)	-	1346936..1347868 (-)	933	WP_001002429.1	GDP-L-fucose synthase family protein	-
KHP_RS06575 (KHP_1238)	gmd	1347861..1349006 (-)	1146	WP_014537398.1	GDP-mannose 4,6-dehydratase	-
KHP_RS06580 (KHP_1239)	-	1349020..1350432 (-)	1413	WP_000694858.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
KHP_RS06585 (KHP_1240)	comB10	1350502..1351638 (-)	1137	WP_001045729.1	DNA type IV secretion system protein ComB10	Machinery gene
KHP_RS06590 (KHP_1241)	comB9	1351631..1352596 (-)	966	WP_014537399.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
KHP_RS06595 (KHP_1242)	comB8	1352596..1353339 (-)	744	WP_000660524.1	type IV secretion system protein	Machinery gene
KHP_RS06600 (KHP_1243)	comB7	1353336..1353461 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
KHP_RS06605 (KHP_1244)	comB6	1353477..1354532 (-)	1056	WP_000786701.1	P-type conjugative transfer protein TrbL	Machinery gene
KHP_RS06610 (KHP_1245)	-	1354540..1355535 (-)	996	WP_000468804.1	PDZ domain-containing protein	-
KHP_RS06615 (KHP_1246)	-	1355535..1355828 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
KHP_RS06620 (KHP_1247)	panD	1355839..1356189 (-)	351	WP_000142208.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42180.82 Da
• Isoelectric Point: 9.9312

>NTDB_id=47112 KHP_RS06585 WP_001045729.1 1350502..1351638(-) (comB10) [Helicobacter pylori 51]
MNKWIKGALVFIGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNIESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQNPKNYEENLIFPTDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEIIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=47112 KHP_RS06585 WP_001045729.1 1350502..1351638(-) (comB10) [Helicobacter pylori 51]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTATAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAATATAGAAAGCTCTAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAGATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
ACCCTAAAAATTACGAAGAAAACCTGATTTTCCCCACGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTTACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAATCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955