Detailed information NTG0047116

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: KHP_RS06605
• Genome accession: NC_017382
• Coordinates: 1353477..1354532 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786701.1
• Uniprot ID: A0AAI7ZX07
• Organism: Helicobacter pylori 51
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1348477..1359532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHP_RS06580 (KHP_1239)	-	1349020..1350432 (-)	1413	WP_000694858.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
KHP_RS06585 (KHP_1240)	comB10	1350502..1351638 (-)	1137	WP_001045729.1	DNA type IV secretion system protein ComB10	Machinery gene
KHP_RS06590 (KHP_1241)	comB9	1351631..1352596 (-)	966	WP_014537399.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
KHP_RS06595 (KHP_1242)	comB8	1352596..1353339 (-)	744	WP_000660524.1	type IV secretion system protein	Machinery gene
KHP_RS06600 (KHP_1243)	comB7	1353336..1353461 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
KHP_RS06605 (KHP_1244)	comB6	1353477..1354532 (-)	1056	WP_000786701.1	P-type conjugative transfer protein TrbL	Machinery gene
KHP_RS06610 (KHP_1245)	-	1354540..1355535 (-)	996	WP_000468804.1	PDZ domain-containing protein	-
KHP_RS06615 (KHP_1246)	-	1355535..1355828 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
KHP_RS06620 (KHP_1247)	panD	1355839..1356189 (-)	351	WP_000142208.1	aspartate 1-decarboxylase	-
KHP_RS06625 (KHP_1248)	-	1356179..1358401 (-)	2223	WP_001051520.1	AAA family ATPase	-
KHP_RS06630 (KHP_1249)	-	1358401..1358676 (-)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
KHP_RS06635 (KHP_1250)	-	1358696..1359109 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39907.88 Da
• Isoelectric Point: 8.8165

>NTDB_id=47116 KHP_RS06605 WP_000786701.1 1353477..1354532(-) (comB6) [Helicobacter pylori 51]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=47116 KHP_RS06605 WP_000786701.1 1353477..1354532(-) (comB6) [Helicobacter pylori 51]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCATTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963