Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   KHP_RS06595 Genome accession   NC_017382
Coordinates   1352596..1353339 (-) Length   247 a.a.
NCBI ID   WP_000660524.1    Uniprot ID   A0AAI8F143
Organism   Helicobacter pylori 51     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347596..1358339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHP_RS06575 (KHP_1238) gmd 1347861..1349006 (-) 1146 WP_014537398.1 GDP-mannose 4,6-dehydratase -
  KHP_RS06580 (KHP_1239) - 1349020..1350432 (-) 1413 WP_000694858.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  KHP_RS06585 (KHP_1240) comB10 1350502..1351638 (-) 1137 WP_001045729.1 DNA type IV secretion system protein ComB10 Machinery gene
  KHP_RS06590 (KHP_1241) comB9 1351631..1352596 (-) 966 WP_014537399.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  KHP_RS06595 (KHP_1242) comB8 1352596..1353339 (-) 744 WP_000660524.1 type IV secretion system protein Machinery gene
  KHP_RS06600 (KHP_1243) comB7 1353336..1353461 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  KHP_RS06605 (KHP_1244) comB6 1353477..1354532 (-) 1056 WP_000786701.1 P-type conjugative transfer protein TrbL Machinery gene
  KHP_RS06610 (KHP_1245) - 1354540..1355535 (-) 996 WP_000468804.1 PDZ domain-containing protein -
  KHP_RS06615 (KHP_1246) - 1355535..1355828 (-) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  KHP_RS06620 (KHP_1247) panD 1355839..1356189 (-) 351 WP_000142208.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=47114 KHP_RS06595 WP_000660524.1 1352596..1353339(-) (comB8) [Helicobacter pylori 51]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=47114 KHP_RS06595 WP_000660524.1 1352596..1353339(-) (comB8) [Helicobacter pylori 51]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment