Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6K87_RS07935 Genome accession   NZ_CP069892
Coordinates   1610926..1611516 (+) Length   196 a.a.
NCBI ID   WP_204982534.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1605926..1616516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS07920 (I6K87_07920) - 1607686..1608144 (-) 459 WP_003027807.1 DUF3021 domain-containing protein -
  I6K87_RS07925 (I6K87_07925) brsR 1608141..1608581 (-) 441 WP_049533411.1 LytTR family DNA-binding domain-containing protein Regulator
  I6K87_RS07930 (I6K87_07930) hexB 1608846..1610792 (+) 1947 WP_049533450.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6K87_RS07935 (I6K87_07935) ruvA 1610926..1611516 (+) 591 WP_204982534.1 Holliday junction branch migration protein RuvA Machinery gene
  I6K87_RS07940 (I6K87_07940) - 1611526..1612080 (+) 555 WP_049533427.1 DNA-3-methyladenine glycosylase I -
  I6K87_RS10075 - 1612085..1612171 (+) 87 Protein_1524 CPBP family intramembrane glutamate endopeptidase -
  I6K87_RS07945 (I6K87_07945) - 1612269..1612679 (-) 411 WP_049533428.1 helix-turn-helix domain-containing protein -
  I6K87_RS07950 (I6K87_07950) cinA 1612949..1614217 (+) 1269 WP_049533429.1 competence/damage-inducible protein A Machinery gene
  I6K87_RS07955 (I6K87_07955) recA 1614265..1615410 (+) 1146 WP_049533430.1 recombinase RecA Machinery gene
  I6K87_RS07960 (I6K87_07960) spx 1615497..1615895 (+) 399 WP_003027770.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21562.98 Da        Isoelectric Point: 6.1148

>NTDB_id=471036 I6K87_RS07935 WP_204982534.1 1610926..1611516(+) (ruvA) [Streptococcus anginosus strain FDAARGOS_1357]
MYEYFKGIISKITAKYIVLEVNSIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFATEEAKQLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGPSESKAPIQTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=471036 I6K87_RS07935 WP_204982534.1 1610926..1611516(+) (ruvA) [Streptococcus anginosus strain FDAARGOS_1357]
ATGTACGAATATTTTAAAGGAATCATCAGCAAAATTACAGCTAAATATATTGTATTGGAAGTCAACTCTATCGGCTATAT
TCTTCATGTGGCTAACCCCTATGCTTACTCAGGACATCTCCATCAGGAAGCTAAGGTCTATGTTCACCAGGTGGTGAGAG
AAGACGCTGAGCTCCTTTACGGCTTTGCGACCGAGGAGGCGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGCCCAGTGTCTGCCTTAGCCATCATTGCGGCAGATGATAATGCGGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGTAAGAAAACAGCCCAGCAGATGGTGCTGGACTTAGAAGGCAAGGTAGTGGCTG
CGGATGGTCCGTCAGAAAGCAAGGCACCCATCCAGACTGTGGATAATCAGGAGCTGGAAGAAGCCATGGAAGCCATGCTG
GCTTTGGGCTACAAAGCTGCTGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACGGATACAGCAGAAAACTATAT
CAAGTCTGCTCTTAAGATGTTAGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

83.756

100

0.842
  ruvA Streptococcus pneumoniae R6

83.756

100

0.842
  ruvA Streptococcus pneumoniae D39

83.756

100

0.842
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.346

100

0.439