Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DXO174_RS05855 Genome accession   NZ_CP059579
Coordinates   1256983..1258065 (+) Length   360 a.a.
NCBI ID   WP_027703769.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain DXO-174     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251983..1263065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXO174_RS05845 (DXO174_005835) - 1253402..1254052 (-) 651 WP_011407794.1 hypothetical protein -
  DXO174_RS05850 (DXO174_005840) - 1254362..1256791 (-) 2430 WP_011257992.1 penicillin-binding protein 1A -
  DXO174_RS05855 (DXO174_005845) comM 1256983..1258065 (+) 1083 WP_027703769.1 pilus assembly protein PilM Machinery gene
  DXO174_RS05860 (DXO174_005850) - 1258065..1258823 (+) 759 WP_011257994.1 PilN domain-containing protein -
  DXO174_RS05865 (DXO174_005855) - 1258820..1259485 (+) 666 WP_011257995.1 type 4a pilus biogenesis protein PilO -
  DXO174_RS05870 (DXO174_005860) - 1259482..1260015 (+) 534 WP_011257996.1 pilus assembly protein PilP -
  DXO174_RS05875 (DXO174_005865) - 1260035..1261984 (+) 1950 WP_011407796.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38478.32 Da        Isoelectric Point: 4.4383

>NTDB_id=470930 DXO174_RS05855 WP_027703769.1 1256983..1258065(+) (comM) [Xanthomonas oryzae pv. oryzae strain DXO-174]
MPVGRGVTVGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGS
KAKNAAAAVAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVEL
RQSALELGGLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMR
RYGLTYEEAGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVT
TVVANPLAQMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=470930 DXO174_RS05855 WP_027703769.1 1256983..1258065(+) (comM) [Xanthomonas oryzae pv. oryzae strain DXO-174]
GTGCCCGTCGGCAGGGGAGTTACCGTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTAC
TGCTGTGAAGCTCTTGCAGCTATCGCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGA
ACGCGGTGGTGGAAAAGAACATCGTCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGC
AAGGCCAAGAACGCGGCCGCTGCCGTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGA
TAGCGACATGGAGGCTCAGGTCGAACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCG
AGGTGCTGGGCCCAATGCCCAACAGCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTG
CGCCAGTCGGCGCTGGAACTCGGTGGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGC
CCTGGTCGCCAGCGAATTGCCGGTGGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGA
GCGTGCTGCGTTCCGGTCGCAGTCTGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGC
CGTTACGGACTCACCTACGAAGAAGCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCT
GGAGCCGTTCAAGGAAGCCACGGTGCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCG
TCGACTGCATCGTGCTGGCCGGCGGTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACC
ACCGTGGTCGCCAACCCGCTTGCCCAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGC
ATTGATGATCGCCACCGGCCTGGCCCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(21-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.997

97.5

0.497
  comM Acinetobacter nosocomialis M2

50.857

97.222

0.494
  pilM Acinetobacter baumannii D1279779

50.571

97.222

0.492
  pilM Legionella pneumophila strain ERS1305867

47.863

97.5

0.467