Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HBNCFIEN_RS13790 Genome accession   NZ_CP059576
Coordinates   3167952..3168422 (+) Length   156 a.a.
NCBI ID   WP_182391646.1    Uniprot ID   A0A7G4RJL2
Organism   Legionella sp. PC997     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3162952..3173422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBNCFIEN_RS13765 (HBNCFIEN_02778) - 3163149..3164126 (-) 978 WP_182391641.1 hypothetical protein -
  HBNCFIEN_RS13770 (HBNCFIEN_02779) - 3164303..3164761 (-) 459 WP_182391642.1 hypothetical protein -
  HBNCFIEN_RS13775 (HBNCFIEN_02780) queF 3164849..3165706 (-) 858 WP_370530126.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  HBNCFIEN_RS17885 - 3165947..3166099 (-) 153 Protein_2724 MerR family DNA-binding transcriptional regulator -
  HBNCFIEN_RS13780 (HBNCFIEN_02781) - 3166191..3166814 (+) 624 WP_182391644.1 NUDIX hydrolase -
  HBNCFIEN_RS13785 (HBNCFIEN_02782) - 3166872..3167819 (+) 948 WP_182391645.1 MerR family transcriptional regulator -
  HBNCFIEN_RS13790 (HBNCFIEN_02783) ssb 3167952..3168422 (+) 471 WP_182391646.1 single-stranded DNA-binding protein Machinery gene
  HBNCFIEN_RS13795 (HBNCFIEN_02784) - 3168609..3168968 (+) 360 WP_182391647.1 cupin domain-containing protein -
  HBNCFIEN_RS13800 (HBNCFIEN_02785) rplQ 3169125..3169508 (-) 384 WP_182391648.1 50S ribosomal protein L17 -
  HBNCFIEN_RS13805 (HBNCFIEN_02786) rpoA 3169527..3170519 (-) 993 WP_182391649.1 DNA-directed RNA polymerase subunit alpha -
  HBNCFIEN_RS13810 (HBNCFIEN_02787) rpsD 3170538..3171158 (-) 621 WP_182391650.1 30S ribosomal protein S4 -
  HBNCFIEN_RS13815 (HBNCFIEN_02788) rpsK 3171175..3171573 (-) 399 WP_003633055.1 30S ribosomal protein S11 -
  HBNCFIEN_RS13820 (HBNCFIEN_02789) rpsM 3171595..3171951 (-) 357 WP_182391651.1 30S ribosomal protein S13 -
  HBNCFIEN_RS13825 rpmJ 3172029..3172142 (-) 114 WP_010946099.1 50S ribosomal protein L36 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17462.33 Da        Isoelectric Point: 4.7980

>NTDB_id=470920 HBNCFIEN_RS13790 WP_182391646.1 3167952..3168422(+) (ssb) [Legionella sp. PC997]
MARGINKVILIGNVGVDPDVRYLPNGNAVTTLSIATSEAWKDKVSGEKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYIE
GSLRTRKWQDQQGQDRYTTEIVANDIQMLDSKGTASSSFDEIPQAQFAPSNQNSGRQQSPQVPQDAFDQLDDDVPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=470920 HBNCFIEN_RS13790 WP_182391646.1 3167952..3168422(+) (ssb) [Legionella sp. PC997]
ATGGCACGTGGTATAAATAAAGTCATCCTAATTGGTAATGTGGGTGTTGATCCTGACGTACGTTATTTACCAAATGGAAA
TGCTGTAACTACCCTCTCAATTGCCACCAGCGAGGCATGGAAAGATAAAGTGTCCGGTGAAAAGCAAGAACGAACTGAAT
GGCACCGTGTGGTATGTTTTAACCGCTTAGGAGAGATAGCCGGCGAATATGTGCGTAAAGGATCCAAACTCTACATTGAA
GGTAGTTTAAGAACCCGAAAATGGCAGGATCAGCAAGGTCAAGATAGATACACTACCGAGATTGTAGCGAATGACATTCA
AATGCTAGATAGTAAAGGTACCGCCTCATCAAGTTTCGATGAGATACCGCAAGCTCAATTCGCACCCAGCAATCAAAATT
CCGGAAGACAACAATCTCCTCAGGTTCCCCAAGATGCTTTTGATCAGTTGGATGACGATGTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G4RJL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.438

100

0.564
  ssb Vibrio cholerae strain A1552

48.864

100

0.551
  ssb Neisseria gonorrhoeae MS11

40.462

100

0.449
  ssb Neisseria meningitidis MC58

38.728

100

0.429