Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H3L91_RS03900 Genome accession   NZ_CP059571
Coordinates   752506..753048 (-) Length   180 a.a.
NCBI ID   WP_040658740.1    Uniprot ID   -
Organism   Neisseria bacilliformis strain DSM 23338     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 747506..758048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS03875 (H3L91_03875) - 747903..748592 (+) 690 WP_007342212.1 aspartate/glutamate racemase family protein -
  H3L91_RS03880 (H3L91_03880) - 748850..749050 (+) 201 WP_007342214.1 hypothetical protein -
  H3L91_RS03885 (H3L91_03885) - 749166..750134 (+) 969 WP_007342215.1 iron chelate uptake ABC transporter family permease subunit -
  H3L91_RS03890 (H3L91_03890) - 750124..751086 (+) 963 WP_007342216.1 iron chelate uptake ABC transporter family permease subunit -
  H3L91_RS03895 (H3L91_03895) - 751210..751968 (+) 759 WP_007342217.1 ATP-binding cassette domain-containing protein -
  H3L91_RS03900 (H3L91_03900) ssb 752506..753048 (-) 543 WP_040658740.1 single-stranded DNA-binding protein Machinery gene
  H3L91_RS03905 (H3L91_03905) - 753053..754435 (-) 1383 WP_007342220.1 MFS transporter -
  H3L91_RS03910 (H3L91_03910) trpS 754614..755624 (+) 1011 WP_007342222.1 tryptophan--tRNA ligase -
  H3L91_RS03915 (H3L91_03915) - 755746..756639 (+) 894 WP_007342223.1 prephenate dehydrogenase/arogenate dehydrogenase family protein -
  H3L91_RS03920 (H3L91_03920) - 757204..757635 (-) 432 WP_007342225.1 TIGR01244 family sulfur transferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20042.19 Da        Isoelectric Point: 5.3036

>NTDB_id=470859 H3L91_RS03900 WP_040658740.1 752506..753048(-) (ssb) [Neisseria bacilliformis strain DSM 23338]
MTVNKVILVGNLGADPEVRYMPNGEPVCNLSLATSESWTDRQSGQRQERTEWHRVTLYRRQAEVAGQYLRKGSKIYIEGR
IQSRKYQDRDGIERTAYEIVANEMKMLDSRQSGGGAPYQEGGYQQGAPAQPYPQSAPQQPYQQAAPQPQYAPEPPAAPAA
HRQSPAPAAPVEDIDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=470859 H3L91_RS03900 WP_040658740.1 752506..753048(-) (ssb) [Neisseria bacilliformis strain DSM 23338]
ATGACCGTCAACAAAGTCATCCTCGTCGGCAACCTCGGTGCCGACCCCGAAGTGCGCTACATGCCCAACGGCGAACCCGT
CTGCAACCTCTCGCTGGCCACCAGCGAAAGCTGGACCGACCGCCAGAGCGGCCAGCGGCAGGAGCGCACCGAATGGCACC
GCGTAACCCTGTACCGCCGCCAGGCCGAAGTGGCCGGGCAATACCTGCGCAAAGGCAGCAAAATCTACATCGAAGGCCGC
ATCCAAAGCCGCAAATACCAAGACCGCGACGGCATCGAGCGCACCGCCTACGAAATCGTCGCCAACGAAATGAAAATGCT
CGACAGCCGCCAAAGCGGCGGCGGCGCGCCCTATCAGGAAGGCGGCTACCAGCAGGGCGCACCCGCGCAGCCCTACCCGC
AATCCGCCCCGCAGCAGCCGTACCAGCAGGCCGCGCCGCAGCCGCAGTATGCGCCCGAACCGCCCGCCGCCCCCGCCGCC
CACCGCCAAAGCCCCGCCCCCGCCGCGCCGGTAGAAGACATCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

65.027

100

0.661
  ssb Neisseria meningitidis MC58

64.286

100

0.65
  ssb Vibrio cholerae strain A1552

50.549

100

0.511
  ssb Glaesserella parasuis strain SC1401

47.34

100

0.494