Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   H3L91_RS01040 Genome accession   NZ_CP059571
Coordinates   200931..201473 (-) Length   180 a.a.
NCBI ID   WP_040659815.1    Uniprot ID   -
Organism   Neisseria bacilliformis strain DSM 23338     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195931..206473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS01025 (H3L91_01025) - 197760..198194 (+) 435 Protein_200 SbmA/BacA-like family transporter -
  H3L91_RS01030 (H3L91_01030) - 198343..199350 (-) 1008 WP_182109823.1 IS5 family transposase -
  H3L91_RS01035 (H3L91_01035) - 199428..200765 (+) 1338 WP_081458604.1 SbmA/BacA-like family transporter -
  H3L91_RS01040 (H3L91_01040) pilE 200931..201473 (-) 543 WP_040659815.1 pilin Machinery gene
  H3L91_RS01045 (H3L91_01045) - 201964..202527 (+) 564 WP_007341530.1 L-threonylcarbamoyladenylate synthase -
  H3L91_RS01050 (H3L91_01050) - 202684..202932 (-) 249 WP_007341531.1 CsbD family protein -
  H3L91_RS01055 (H3L91_01055) - 203194..204252 (-) 1059 WP_007341532.1 S49 family peptidase -
  H3L91_RS01060 (H3L91_01060) - 204396..205127 (-) 732 WP_007341533.1 TIGR00730 family Rossman fold protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18789.41 Da        Isoelectric Point: 6.3188

>NTDB_id=470855 H3L91_RS01040 WP_040659815.1 200931..201473(-) (pilE) [Neisseria bacilliformis strain DSM 23338]
MKAMQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRSRITEGLNLAESAKTMLGTDATSVNDLDIAVAAWNRQANGTGA
TSKYVKSVLMNTTGDTRGELTVTFDGAAVGVKTGEDTLVLTPWINDGTNKTRLAKALTDGVAGNLDWSCQSATNATATKQ
IGAAGTAGTVLEKYAPSQCR

Nucleotide


Download         Length: 543 bp        

>NTDB_id=470855 H3L91_RS01040 WP_040659815.1 200931..201473(-) (pilE) [Neisseria bacilliformis strain DSM 23338]
ATGAAAGCAATGCAAAAAGGTTTCACCCTGATCGAGTTGATGATCGTTGTCGCCATTATCGGTATTTTGGCTGCCATCGC
CCTGCCGGCTTACCAGGACTACACTGTCCGCAGCCGTATCACTGAGGGTCTGAACCTGGCCGAATCCGCCAAAACCATGC
TCGGTACCGACGCTACTTCCGTAAACGACTTGGACATCGCTGTTGCCGCTTGGAACCGTCAGGCTAACGGTACTGGTGCT
ACTTCCAAATACGTGAAAAGCGTGCTGATGAACACTACCGGCGACACTCGCGGCGAACTGACTGTTACATTCGACGGTGC
TGCCGTTGGTGTGAAAACCGGTGAAGACACTCTGGTTCTGACTCCTTGGATCAACGACGGTACCAACAAAACCCGTCTGG
CCAAAGCCCTGACTGACGGCGTTGCCGGTAACCTCGACTGGTCTTGCCAATCCGCTACCAACGCTACTGCTACCAAACAA
ATCGGCGCAGCTGGTACTGCCGGTACTGTTCTGGAAAAATACGCTCCTTCGCAATGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Pilin (bacterial filament) (Pilin)

(36-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

45.771

100

0.511
  pilA Ralstonia pseudosolanacearum GMI1000

41.667

100

0.417
  pilA2 Legionella pneumophila str. Paris

40.341

97.778

0.394
  pilA2 Legionella pneumophila strain ERS1305867

39.773

97.778

0.389