Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H3L92_RS09960 Genome accession   NZ_CP059570
Coordinates   2116697..2118871 (+) Length   724 a.a.
NCBI ID   WP_085366128.1    Uniprot ID   A0A1X3D8E7
Organism   Neisseria dentiae strain DSM 19151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2111697..2123871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS09940 (H3L92_09940) pilM 2113784..2114881 (+) 1098 WP_085366124.1 type IV pilus assembly protein PilM -
  H3L92_RS09945 (H3L92_09945) - 2114883..2115491 (+) 609 WP_085366125.1 PilN domain-containing protein -
  H3L92_RS09950 (H3L92_09950) - 2115495..2116136 (+) 642 WP_085366126.1 type 4a pilus biogenesis protein PilO -
  H3L92_RS09955 (H3L92_09955) pilP 2116154..2116681 (+) 528 WP_085366127.1 pilus assembly protein PilP Machinery gene
  H3L92_RS09960 (H3L92_09960) pilQ 2116697..2118871 (+) 2175 WP_085366128.1 type IV pilus secretin PilQ Machinery gene
  H3L92_RS09965 (H3L92_09965) - 2118936..2119472 (+) 537 WP_085366129.1 shikimate kinase -
  H3L92_RS09970 (H3L92_09970) aroB 2120123..2121202 (+) 1080 WP_085366130.1 3-dehydroquinate synthase -
  H3L92_RS09975 (H3L92_09975) pta 2121575..2123086 (+) 1512 WP_085366131.1 phosphate acetyltransferase -
  H3L92_RS09980 (H3L92_09980) yihA 2123176..2123805 (-) 630 WP_085366132.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 78580.16 Da        Isoelectric Point: 9.8941

>NTDB_id=470840 H3L92_RS09960 WP_085366128.1 2116697..2118871(+) (pilQ) [Neisseria dentiae strain DSM 19151]
MNSRNIKKIFAAISVGFAVQTAFAGNITDINVSSLPNNQKIIKIKFDKDVATPRGFITTTPARIALDFSNTNVQLPQPVL
EYADPLINQITAAQNDNRARILLGLNKASQYNTEIKGNEVWVYVSEAADQTTRTPQQRNHTAVAAAPAAPAAVTAPRREQ
AAASANIDFRKGARNSGIIELSAPGFTGQPDIKKQSDRITVTLKNHPLPAQAQRSLDVSDFNTPVRNVTMKRIGNDTQLV
IRNHGSWDVNTQSANGRFSFEISQKTNIASQGLSATPNKSFNGRKISLDFQDVEVRTILQILAKESGMNIVASDTVSGKM
TLSLKDVPWDQALDLVMQARNLDMRRQGNIINVAPREELLAKDKATLQAQKEIDDLGPLLSQTFQLKYKNVEEFRKILRL
DESGNSSDRNTLLSGRGSALIDPATNTLIITDNRLVIQKFQKLIEELDVPTRQVMVEARIVEAEDGFSRNIGVKFGYTGV
NGRSTWGSNWTNAVNNSGTAYNNGVTLANAVLSGSSTIPTTTPLEMSPNISLPVAAATSSIALVRAVSSGALGLELAAMQ
EQSKGKIISNPRVLTQDRKEAKIESGSEIPYEEATSSGATSITFKKAVLGLTVTPNITPDGQVIMSVKINKDSPQDCITG
GVTTKCISTKQLQTQAMVEDGGTLIVGGIYEEENGNTVAKVPLLGDIPVVGNLFKSRTRSEKRRELLIFITPRIMDHVGS
NLRY

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=470840 H3L92_RS09960 WP_085366128.1 2116697..2118871(+) (pilQ) [Neisseria dentiae strain DSM 19151]
ATGAACTCACGCAACATTAAAAAAATATTCGCCGCTATCAGCGTCGGTTTTGCCGTTCAGACGGCCTTTGCAGGCAATAT
CACCGATATCAACGTATCGTCTTTGCCCAACAACCAAAAAATCATCAAAATCAAATTTGATAAAGATGTAGCCACACCGC
GCGGCTTCATCACCACCACCCCTGCGCGCATTGCCTTGGACTTCAGCAACACCAACGTGCAATTGCCGCAACCCGTTTTG
GAATATGCCGACCCGTTGATCAATCAGATTACCGCCGCCCAAAACGACAACCGTGCGCGTATTCTGCTCGGCCTGAACAA
AGCCAGCCAATACAACACCGAAATCAAAGGCAACGAAGTATGGGTATATGTGAGCGAAGCGGCTGACCAAACCACCCGCA
CGCCGCAGCAGCGCAACCATACGGCTGTTGCCGCCGCACCTGCCGCACCTGCTGCCGTTACCGCGCCCCGCCGCGAGCAG
GCGGCCGCATCTGCCAATATCGACTTCCGCAAAGGTGCACGCAACTCAGGCATTATTGAGCTGAGCGCACCCGGCTTTAC
CGGCCAACCGGATATCAAAAAGCAAAGCGACCGCATCACCGTTACCCTGAAAAACCATCCGCTGCCCGCCCAAGCGCAAC
GCAGCTTGGATGTAAGCGACTTCAACACGCCTGTCCGCAACGTTACGATGAAACGCATCGGCAACGACACCCAATTGGTT
ATCCGCAACCACGGCAGCTGGGATGTGAACACGCAATCCGCCAACGGCCGCTTCAGCTTTGAAATCAGCCAGAAAACCAA
TATCGCCTCGCAGGGTTTGTCCGCCACACCCAACAAATCGTTTAACGGCCGCAAAATTTCTTTAGACTTCCAAGACGTGG
AAGTGCGCACCATTTTGCAGATTCTCGCCAAAGAATCCGGCATGAACATTGTTGCCAGCGACACCGTTAGCGGCAAAATG
ACCCTTTCCCTGAAAGACGTGCCGTGGGATCAGGCGTTGGATTTGGTGATGCAGGCGCGTAATCTCGATATGCGCCGCCA
AGGCAACATTATCAACGTTGCGCCCCGCGAAGAATTGCTGGCAAAAGACAAAGCCACTTTGCAGGCCCAAAAAGAAATCG
ACGATCTCGGCCCTCTGTTGTCGCAAACCTTCCAATTAAAATACAAAAACGTGGAAGAGTTCCGCAAAATCCTGCGCTTG
GACGAGAGCGGCAACAGCAGCGACCGCAACACCTTGTTGAGCGGACGCGGCAGCGCCCTCATCGACCCTGCCACCAACAC
CTTGATTATTACCGACAACCGTCTCGTTATTCAGAAATTCCAAAAACTGATTGAAGAGTTGGATGTGCCCACCCGCCAAG
TAATGGTGGAAGCGCGTATTGTTGAAGCAGAAGACGGTTTTTCACGCAATATCGGTGTCAAATTCGGCTACACCGGCGTA
AACGGCCGTTCTACTTGGGGTTCGAACTGGACGAATGCAGTTAATAACTCCGGCACTGCTTATAACAACGGTGTAACGCT
GGCTAATGCCGTTCTCAGCGGTTCGTCAACCATTCCCACCACCACCCCGTTGGAAATGAGTCCGAACATCAGCCTGCCGG
TTGCCGCCGCTACTTCCAGCATTGCGCTGGTGCGTGCAGTCTCTTCCGGTGCATTGGGTTTGGAACTGGCAGCCATGCAG
GAACAAAGCAAAGGCAAAATTATTTCCAATCCGCGCGTGTTAACCCAAGACCGCAAAGAAGCCAAAATCGAATCGGGTTC
GGAAATTCCTTATGAAGAGGCAACCTCCAGCGGCGCCACTTCCATCACGTTCAAAAAAGCCGTATTGGGTTTGACCGTTA
CCCCCAACATCACGCCCGACGGCCAAGTGATTATGAGCGTGAAAATCAATAAAGACAGCCCGCAAGACTGTATCACCGGC
GGCGTAACCACCAAATGTATCAGCACCAAACAGCTGCAAACCCAAGCGATGGTGGAAGACGGCGGCACACTGATCGTGGG
CGGCATTTATGAAGAAGAAAACGGCAATACCGTGGCCAAAGTTCCCCTGCTGGGTGATATTCCCGTGGTGGGCAACCTCT
TCAAATCACGCACCCGTTCAGAAAAACGCCGCGAGCTGCTGATTTTCATCACCCCGCGCATTATGGATCATGTGGGCAGC
AACCTGCGCTACTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-115)

Secretin and TonB N terminus short domain (STN)

(309-353)

Bacterial type II and III secretion system protein (Secretin)

(558-716)

Bacterial type II/III secretion system short domain (Secretin_N)

(382-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3D8E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

57.801

100

0.624
  pilQ Neisseria gonorrhoeae strain FA1090

60.753

100

0.624
  pilQ Neisseria meningitidis MC58

65.603

77.901

0.511