Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H3L92_RS09955 Genome accession   NZ_CP059570
Coordinates   2116154..2116681 (+) Length   175 a.a.
NCBI ID   WP_085366127.1    Uniprot ID   A0A1X3D8I2
Organism   Neisseria dentiae strain DSM 19151     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2111154..2121681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS09935 (H3L92_09935) - 2111204..2113633 (-) 2430 WP_085366123.1 penicillin-binding protein 1A -
  H3L92_RS09940 (H3L92_09940) pilM 2113784..2114881 (+) 1098 WP_085366124.1 type IV pilus assembly protein PilM -
  H3L92_RS09945 (H3L92_09945) - 2114883..2115491 (+) 609 WP_085366125.1 PilN domain-containing protein -
  H3L92_RS09950 (H3L92_09950) - 2115495..2116136 (+) 642 WP_085366126.1 type 4a pilus biogenesis protein PilO -
  H3L92_RS09955 (H3L92_09955) pilP 2116154..2116681 (+) 528 WP_085366127.1 pilus assembly protein PilP Machinery gene
  H3L92_RS09960 (H3L92_09960) pilQ 2116697..2118871 (+) 2175 WP_085366128.1 type IV pilus secretin PilQ Machinery gene
  H3L92_RS09965 (H3L92_09965) - 2118936..2119472 (+) 537 WP_085366129.1 shikimate kinase -
  H3L92_RS09970 (H3L92_09970) aroB 2120123..2121202 (+) 1080 WP_085366130.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19239.47 Da        Isoelectric Point: 8.0105

>NTDB_id=470839 H3L92_RS09955 WP_085366127.1 2116154..2116681(+) (pilP) [Neisseria dentiae strain DSM 19151]
MKNKILLAGILALSACTPAHEDLNQWMNDTRQQAKSKVIPFEAPSVSQAKTYTPPNHSGLNAFDSKRLNAAQQGANAPNT
NRPKEVLENFSLETLKYVGTLSKGNRVTGYVEADGHVYTVQPGNYIGQNYGRIQSITPDLITITELVEDTYGNWTYRKAE
LPLSSADNNAAQNNK

Nucleotide


Download         Length: 528 bp        

>NTDB_id=470839 H3L92_RS09955 WP_085366127.1 2116154..2116681(+) (pilP) [Neisseria dentiae strain DSM 19151]
ATGAAAAACAAAATACTGCTCGCAGGCATATTGGCGTTATCCGCCTGCACACCGGCCCACGAAGATTTGAACCAATGGAT
GAACGATACCCGCCAGCAGGCCAAATCTAAAGTGATTCCTTTTGAAGCACCCTCGGTCAGCCAGGCCAAAACCTACACAC
CACCCAACCACAGCGGCCTGAATGCCTTCGACAGCAAACGTTTGAATGCAGCACAACAGGGGGCCAACGCACCAAACACC
AACCGCCCGAAAGAAGTGCTGGAAAACTTTAGTTTGGAAACGCTGAAATATGTAGGCACTTTAAGTAAAGGAAACCGGGT
TACCGGTTATGTAGAAGCCGACGGCCACGTTTACACCGTACAACCGGGCAACTACATCGGCCAAAATTACGGTCGGATTC
AAAGCATCACACCCGACCTGATTACGATTACGGAGCTTGTAGAAGACACCTACGGCAACTGGACCTACCGAAAAGCAGAA
CTACCGTTGAGCAGCGCCGACAACAACGCCGCTCAAAACAACAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3D8I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

55.233

98.286

0.543