NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	H3L93_RS07710	Genome accession	NZ_CP059569
Coordinates	1429769..1430602 (-)	Length	277 a.a.
NCBI ID	WP_040558143.1	Uniprot ID	-
Organism	Kingella oralis strain DSM 18271
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1424769..1435602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H3L93_RS07680 (H3L93_07660)	-	1425589..1426593 (+)	1005	WP_040558145.1	DUF1887 family protein	-
H3L93_RS07685 (H3L93_07665)	-	1426654..1427100 (+)	447	WP_003794510.1	META domain-containing protein	-
H3L93_RS07690 (H3L93_07670)	-	1427174..1427794 (-)	621	WP_003794508.1	L-threonylcarbamoyladenylate synthase	-
H3L93_RS07695 (H3L93_07675)	pncC	1427854..1428330 (-)	477	WP_003794506.1	nicotinamide-nucleotide amidase	-
H3L93_RS07700 (H3L93_07680)	zapD	1428357..1429118 (-)	762	WP_003794504.1	cell division protein ZapD	-
H3L93_RS07705 (H3L93_07685)	coaE	1429159..1429767 (-)	609	WP_003794503.1	dephospho-CoA kinase	-
H3L93_RS07710 (H3L93_07690)	pilD	1429769..1430602 (-)	834	WP_040558143.1	A24 family peptidase	Machinery gene
H3L93_RS07715 (H3L93_07695)	pilG	1430613..1431896 (-)	1284	WP_003794498.1	type II secretion system F family protein	Machinery gene
H3L93_RS07720 (H3L93_07700)	pilF	1431920..1433605 (-)	1686	WP_003794495.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H3L93_RS07735 (H3L93_07715)	lolD	1434079..1434768 (-)	690	WP_003794493.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-

Sequence

Protein

Download Length: 277 a.a. Molecular weight: 30787.71 Da Isoelectric Point: 7.9414

                                >NTDB_id=470797 H3L93_RS07710 WP_040558143.1 1429769..1430602(-) (pilD) [Kingella oralis strain DSM 18271]

MDIIIVFAVIFGLAVGSFLNVVIYRLPVWLNNTWTRAAREHLELEAIEQPTFNLITPPSRCGNCGAGVKPWQNIPVISWL

ILRGKCYSCHTPISIRYPLVELLTGVLFGLMAWQYGYSLETIGACVFTAYVIAMTFIDADTQLLPDELTLPLIWFGLLFN

LKTGFVPLEQAVIGAMVGYMSLWTLYWAFKLLTGKEGMGYGDFKLLAAIGAWLGVAVIPITLLVASFVGIAAFLVKRIAR

NTPMAFGPCLAIAGWFVFLFHGSVGEFIRWWLMKSGF

Nucleotide

Download Length: 834 bp

                                >NTDB_id=470797 H3L93_RS07710 WP_040558143.1 1429769..1430602(-) (pilD) [Kingella oralis strain DSM 18271]

TTGGATATTATTATTGTCTTTGCTGTTATCTTTGGTCTAGCAGTTGGCAGTTTTCTCAATGTGGTCATTTATCGCTTGCC

CGTGTGGCTGAATAATACGTGGACACGGGCAGCGAGAGAACATTTGGAACTGGAAGCTATTGAGCAGCCGACTTTCAACT

TAATTACGCCGCCATCGCGTTGCGGAAATTGCGGGGCTGGCGTTAAGCCTTGGCAAAATATTCCTGTGATTAGTTGGTTG

ATTTTGCGTGGTAAATGCTATTCTTGTCATACACCGATTAGTATCCGCTATCCCTTGGTGGAATTGTTAACGGGCGTGTT

GTTTGGGCTGATGGCATGGCAATATGGTTATTCGCTGGAAACCATCGGCGCGTGTGTGTTTACGGCATATGTGATTGCGA

TGACGTTTATTGATGCGGATACGCAATTATTGCCTGACGAGCTGACCTTGCCATTGATATGGTTCGGGTTGCTGTTTAAC

TTGAAAACAGGTTTTGTGCCATTGGAACAAGCAGTTATCGGTGCAATGGTGGGTTATATGAGCCTGTGGACATTGTATTG

GGCATTTAAGCTGCTCACAGGCAAAGAGGGCATGGGCTATGGCGACTTCAAATTGCTGGCGGCAATCGGAGCGTGGCTGG

GTGTTGCTGTTATACCGATTACCTTACTTGTTGCTTCGTTTGTGGGCATTGCGGCGTTTTTGGTAAAACGCATTGCGCGA

AATACGCCGATGGCATTTGGTCCATGCTTAGCGATTGCAGGTTGGTTTGTGTTTTTATTTCACGGCTCGGTGGGCGAATT

TATCCGCTGGTGGCTGATGAAATCAGGCTTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-115)

Type IV leader peptidase family (Peptidase_A24)

(126-232)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Neisseria gonorrhoeae MS11	57.463	96.751	0.556
pilD	Vibrio campbellii strain DS40M4	52.692	93.863	0.495
pilD	Vibrio cholerae strain A1552	49.438	96.39	0.477
pilD	Acinetobacter baumannii D1279779	45.56	93.502	0.426
pilD	Acinetobacter nosocomialis M2	45.525	92.78	0.422

Detailed information NTG0470797