Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H3L94_RS01490 Genome accession   NZ_CP059567
Coordinates   323483..324337 (+) Length   284 a.a.
NCBI ID   WP_182122377.1    Uniprot ID   A0A7D7RN58
Organism   Neisseria shayeganii strain DSM 22244     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 318483..329337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L94_RS01475 (H3L94_01475) glcE 318861..319937 (-) 1077 WP_182122374.1 glycolate oxidase subunit GlcE -
  H3L94_RS01480 (H3L94_01480) pilF 320356..322032 (+) 1677 WP_182122375.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H3L94_RS01485 (H3L94_01485) pilG 322065..323309 (+) 1245 WP_182122376.1 type II secretion system F family protein Machinery gene
  H3L94_RS01490 (H3L94_01490) pilD 323483..324337 (+) 855 WP_182122377.1 A24 family peptidase Machinery gene
  H3L94_RS01495 (H3L94_01495) coaE 324338..324946 (+) 609 WP_182122378.1 dephospho-CoA kinase -
  H3L94_RS01500 (H3L94_01500) zapD 324950..325726 (+) 777 WP_182122379.1 cell division protein ZapD -
  H3L94_RS01505 (H3L94_01505) yacG 325723..325944 (+) 222 WP_182122380.1 DNA gyrase inhibitor YacG -
  H3L94_RS01510 (H3L94_01510) rlmD 326036..327328 (+) 1293 WP_182122381.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  H3L94_RS01515 (H3L94_01515) - 327582..329315 (+) 1734 WP_182122382.1 potassium/proton antiporter -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 31183.50 Da        Isoelectric Point: 8.0335

>NTDB_id=470768 H3L94_RS01490 WP_182122377.1 323483..324337(+) (pilD) [Neisseria shayeganii strain DSM 22244]
MNFEAQVSIVMAVLLGLLVGSFLNVVIYRLPLMLEKQWQVLAKQHLDLPLTEEELQPFNLMFPPSRCPECGTGVKPWQNI
PLLSYLLLRGRCHHCRIPIGWRYPAVELLTGVLFGVVAWRYGVSGVTLGGLLLTAMLIAMTFIDADTQLLPDQLTLPLIW
LGLLFNWQFGFVSLPQALLGAVCGYMSLWLLFHLFKLLTGKDGMGYGDFKLLAALGAWLGVGSLPVIVFMAALVGLVAAL
VMKAAKGQPIAFGPALAIAGWIVFVANDVVKQGMDWWLSKSGFI

Nucleotide


Download         Length: 855 bp        

>NTDB_id=470768 H3L94_RS01490 WP_182122377.1 323483..324337(+) (pilD) [Neisseria shayeganii strain DSM 22244]
ATGAATTTTGAGGCTCAAGTTTCTATTGTTATGGCCGTTCTCTTGGGACTGTTGGTCGGCAGCTTCCTAAATGTGGTGAT
TTACCGGCTGCCGCTGATGTTGGAAAAACAGTGGCAGGTATTGGCCAAGCAGCATTTGGATTTACCCTTAACCGAAGAAG
AGCTCCAGCCGTTTAATCTAATGTTTCCGCCCTCGCGCTGTCCAGAATGCGGCACCGGAGTTAAGCCTTGGCAGAATATT
CCGTTGCTCAGTTACCTGCTGTTGCGCGGGCGTTGTCATCACTGCCGCATACCGATTGGCTGGCGTTATCCGGCGGTGGA
GCTGCTGACCGGTGTGTTATTCGGTGTGGTGGCTTGGCGATACGGGGTAAGCGGCGTGACGCTGGGCGGTTTATTGTTGA
CCGCCATGTTGATTGCGATGACGTTTATCGATGCCGATACGCAGCTGTTACCCGACCAGTTGACCTTGCCTTTGATTTGG
CTTGGATTGTTGTTTAACTGGCAATTCGGTTTTGTCAGCCTGCCGCAAGCCTTGCTGGGTGCGGTTTGCGGCTACATGAG
CCTGTGGCTGCTGTTCCACCTGTTTAAACTGCTGACCGGCAAAGATGGCATGGGCTATGGCGACTTCAAGTTGTTGGCGG
CCTTGGGCGCGTGGCTAGGGGTGGGCAGTTTGCCGGTGATTGTGTTTATGGCGGCTTTAGTCGGCCTGGTGGCGGCTTTG
GTGATGAAAGCGGCCAAAGGCCAGCCGATTGCATTCGGTCCGGCATTGGCGATTGCAGGCTGGATTGTGTTTGTGGCCAA
TGATGTGGTGAAGCAAGGCATGGATTGGTGGCTGTCTAAGTCGGGATTTATTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(132-239)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(14-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7RN58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

63.736

96.127

0.613
  pilD Vibrio cholerae strain A1552

50.181

97.535

0.489
  pilD Vibrio campbellii strain DS40M4

46.931

97.535

0.458
  pilD Acinetobacter baumannii D1279779

47.191

94.014

0.444
  pilD Acinetobacter nosocomialis M2

47.17

93.31

0.44