Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L95_RS11810 Genome accession   NZ_CP059566
Coordinates   2480014..2480313 (+) Length   99 a.a.
NCBI ID   WP_040668782.1    Uniprot ID   -
Organism   Neisseria sicca strain DSM 17713     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2481020..2481643 2480014..2480313 flank 707


Gene organization within MGE regions


Location: 2480014..2481643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS11810 (H3L95_11810) comE 2480014..2480313 (+) 300 WP_040668782.1 helix-hairpin-helix domain-containing protein Machinery gene
  H3L95_RS11815 (H3L95_11815) - 2480896..2481643 (-) 748 Protein_2300 transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10298.06 Da        Isoelectric Point: 10.6262

>NTDB_id=470750 H3L95_RS11810 WP_040668782.1 2480014..2480313(+) (comE) [Neisseria sicca strain DSM 17713]
MKKFLFAALSLLTASLSLAAVNINTASPSELEALPGIGPAKAKAIVDYRQQHGAFKSVEELKNVKGIGEGIFSKLKAEAT
VTPAPANPKAKNAVPSPKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=470750 H3L95_RS11810 WP_040668782.1 2480014..2480313(+) (comE) [Neisseria sicca strain DSM 17713]
ATGAAAAAATTCCTCTTTGCCGCCCTCTCCCTGCTGACCGCTTCGCTGTCGCTGGCCGCCGTCAACATCAATACCGCTTC
CCCGTCCGAGTTGGAAGCCCTGCCCGGTATCGGCCCTGCCAAAGCCAAAGCCATCGTGGACTACCGTCAACAACATGGTG
CCTTCAAATCGGTCGAGGAGTTGAAAAACGTCAAAGGTATCGGTGAGGGTATCTTCTCCAAACTGAAGGCGGAGGCAACC
GTCACCCCCGCACCTGCCAACCCAAAAGCTAAAAACGCCGTCCCATCACCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

81.818

0.434
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

86.869

0.394