Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L95_RS10050 Genome accession   NZ_CP059566
Coordinates   2102483..2102782 (-) Length   99 a.a.
NCBI ID   WP_040668782.1    Uniprot ID   -
Organism   Neisseria sicca strain DSM 17713     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2097483..2107782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS10030 (H3L95_10030) efeU 2097724..2098560 (+) 837 WP_003759754.1 iron uptake transporter permease EfeU -
  H3L95_RS10035 (H3L95_10035) efeO 2098615..2099778 (+) 1164 WP_040668779.1 iron uptake system protein EfeO -
  H3L95_RS10040 (H3L95_10040) efeB 2100261..2101529 (+) 1269 WP_040668781.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  H3L95_RS10045 (H3L95_10045) - 2101805..2102017 (-) 213 Protein_1964 IS30 family transposase -
  H3L95_RS10050 (H3L95_10050) comE 2102483..2102782 (-) 300 WP_040668782.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10298.06 Da        Isoelectric Point: 10.6262

>NTDB_id=470740 H3L95_RS10050 WP_040668782.1 2102483..2102782(-) (comE) [Neisseria sicca strain DSM 17713]
MKKFLFAALSLLTASLSLAAVNINTASPSELEALPGIGPAKAKAIVDYRQQHGAFKSVEELKNVKGIGEGIFSKLKAEAT
VTPAPANPKAKNAVPSPKK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=470740 H3L95_RS10050 WP_040668782.1 2102483..2102782(-) (comE) [Neisseria sicca strain DSM 17713]
ATGAAAAAATTCCTCTTTGCCGCCCTCTCCCTGCTGACCGCTTCGCTGTCGCTGGCCGCCGTCAACATCAATACCGCTTC
CCCGTCCGAGTTGGAAGCCCTGCCCGGTATCGGCCCTGCCAAAGCCAAAGCCATCGTGGACTACCGTCAACAACATGGTG
CCTTCAAATCGGTCGAGGAGTTGAAAAACGTCAAAGGTATCGGTGAGGGTATCTTCTCCAAACTGAAGGCGGAGGCAACC
GTCACCCCCGCACCTGCCAACCCAAAAGCTAAAAACGCCGTCCCATCACCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  comE Neisseria gonorrhoeae MS11

59

100

0.596
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

81.818

0.434
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

86.869

0.394