Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H3L95_RS02895 Genome accession   NZ_CP059566
Coordinates   585415..585930 (-) Length   171 a.a.
NCBI ID   WP_040668050.1    Uniprot ID   -
Organism   Neisseria sicca strain DSM 17713     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 582478..612158 585415..585930 within 0


Gene organization within MGE regions


Location: 582478..612158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS02885 (H3L95_02885) - 582478..583998 (-) 1521 WP_182096201.1 site-specific integrase -
  H3L95_RS02890 (H3L95_02890) - 583988..585265 (-) 1278 WP_003756643.1 site-specific integrase -
  H3L95_RS02895 (H3L95_02895) ssb 585415..585930 (-) 516 WP_040668050.1 single-stranded DNA-binding protein Machinery gene
  H3L95_RS02900 (H3L95_02900) - 585934..587316 (-) 1383 WP_003756647.1 MFS transporter -
  H3L95_RS02905 (H3L95_02905) - 587445..588074 (-) 630 WP_003756649.1 lytic transglycosylase domain-containing protein -
  H3L95_RS02910 (H3L95_02910) ppx 588355..589863 (+) 1509 WP_003756652.1 exopolyphosphatase -
  H3L95_RS02915 (H3L95_02915) - 590195..591042 (+) 848 WP_128887897.1 IS630 family transposase -
  H3L95_RS02920 (H3L95_02920) - 591120..591992 (+) 873 WP_003756659.1 metallophosphoesterase -
  H3L95_RS02935 (H3L95_02935) - 592619..592804 (+) 186 WP_040668056.1 hypothetical protein -
  H3L95_RS02940 (H3L95_02940) - 593043..595028 (+) 1986 WP_003756666.1 slipin family protein -
  H3L95_RS02945 (H3L95_02945) - 595376..595849 (-) 474 WP_003756669.1 hypothetical protein -
  H3L95_RS02950 (H3L95_02950) - 595906..596151 (-) 246 WP_040668059.1 hypothetical protein -
  H3L95_RS02955 (H3L95_02955) - 596174..596905 (-) 732 WP_040668061.1 hypothetical protein -
  H3L95_RS02960 (H3L95_02960) - 597415..597738 (+) 324 WP_003756678.1 hypothetical protein -
  H3L95_RS02965 (H3L95_02965) tmk 597945..598571 (+) 627 WP_003756680.1 dTMP kinase -
  H3L95_RS02970 (H3L95_02970) - 598793..600073 (+) 1281 WP_003756682.1 malic enzyme-like NAD(P)-binding protein -
  H3L95_RS02975 (H3L95_02975) aroA 600159..601457 (-) 1299 WP_040668065.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  H3L95_RS02980 (H3L95_02980) - 601870..602196 (-) 327 WP_003756693.1 low molecular weight protein tyrosine phosphatase family protein -
  H3L95_RS02985 (H3L95_02985) - 602268..602483 (-) 216 WP_040668071.1 hypothetical protein -
  H3L95_RS02990 (H3L95_02990) - 602652..603965 (-) 1314 WP_003756699.1 replication-associated recombination protein A -
  H3L95_RS13730 - 604030..605430 (-) 1401 WP_240593946.1 hypothetical protein -
  H3L95_RS03000 (H3L95_03000) - 605588..605965 (+) 378 WP_080614307.1 hypothetical protein -
  H3L95_RS03005 (H3L95_03005) thrC 606109..607521 (+) 1413 WP_003756709.1 threonine synthase -
  H3L95_RS03010 (H3L95_03010) - 607730..608506 (+) 777 WP_003756710.1 ferredoxin--NADP reductase -
  H3L95_RS03015 (H3L95_03015) - 608653..609144 (+) 492 WP_003756712.1 DUF1841 family protein -
  H3L95_RS03020 (H3L95_03020) - 609497..609865 (+) 369 WP_003756713.1 hypothetical protein -
  H3L95_RS03025 (H3L95_03025) - 610056..610493 (-) 438 WP_003756715.1 hypothetical protein -
  H3L95_RS03030 (H3L95_03030) - 611151..612158 (-) 1008 WP_003756717.1 putative phage abortive infection protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19152.20 Da        Isoelectric Point: 5.3108

>NTDB_id=470723 H3L95_RS02895 WP_040668050.1 585415..585930(-) (ssb) [Neisseria sicca strain DSM 17713]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRRLAEIAGQYLKKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGGRNDNSGGAPYDDGGYSQGSYQQQAPQQQYQAAPQNQEPPAAPRRQAPAAPAA
PVEDIDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=470723 H3L95_RS02895 WP_040668050.1 585415..585930(-) (ssb) [Neisseria sicca strain DSM 17713]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGTCTCGGTCGCGACCCCGAAGTCCGCTATATGCCCAACGGCGAAGCCGT
CTGCAATTTCAGCGTCGCCACCAGCGAAACCTGGAACGACCGCAACGGCCAGCGCGTGGAACGCACCGAGTGGCACAACA
TCACTATGTACCGCCGCCTCGCCGAAATCGCTGGGCAATACCTGAAAAAAGGCAGCCAAGTTTATCTGGAAGGCCGCATC
CAAAGCCGTAAATACCAAGGCAAAGACGGCATCGAACGTACCGCATACGACATTATCGCCAATGAAATGAAAATGCTCGG
CGGCCGCAACGACAACAGCGGCGGCGCACCTTACGACGACGGCGGTTACAGCCAAGGCAGCTACCAACAACAAGCGCCAC
AACAACAATACCAAGCCGCCCCGCAAAACCAAGAACCCCCTGCCGCCCCCCGCCGCCAAGCTCCCGCCGCACCGGCAGCC
CCTGTCGAGGACATCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

84.659

100

0.871
  ssb Neisseria meningitidis MC58

83.429

100

0.854
  ssb Glaesserella parasuis strain SC1401

46.995

100

0.503
  ssb Vibrio cholerae strain A1552

48.315

100

0.503