Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H3L96_RS01165 Genome accession   NZ_CP059565
Coordinates   219119..221281 (-) Length   720 a.a.
NCBI ID   WP_040667189.1    Uniprot ID   -
Organism   Neisseria wadsworthii strain DSM 22245     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 214119..226281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS01135 (H3L96_01135) - 215027..215284 (+) 258 WP_009117456.1 hypothetical protein -
  H3L96_RS01140 (H3L96_01140) - 215464..216069 (+) 606 WP_040667176.1 glutathione S-transferase N-terminal domain-containing protein -
  H3L96_RS01145 (H3L96_01145) - 216170..216568 (+) 399 WP_009117458.1 ClpXP protease specificity-enhancing factor -
  H3L96_RS01150 (H3L96_01150) truB 216675..217595 (+) 921 WP_040667184.1 tRNA pseudouridine(55) synthase TruB -
  H3L96_RS01155 (H3L96_01155) - 217829..218542 (+) 714 WP_009117460.1 phosphoglycolate phosphatase -
  H3L96_RS01160 (H3L96_01160) recX 218617..219069 (+) 453 WP_009117461.1 recombination regulator RecX Regulator
  H3L96_RS01165 (H3L96_01165) pilQ 219119..221281 (-) 2163 WP_040667189.1 type IV pilus secretin PilQ family protein Machinery gene
  H3L96_RS01170 (H3L96_01170) - 221302..221838 (-) 537 WP_009117463.1 pilus assembly protein PilP -
  H3L96_RS01175 (H3L96_01175) pilO 221860..222504 (-) 645 WP_009117464.1 type 4a pilus biogenesis protein PilO -
  H3L96_RS01180 (H3L96_01180) - 222494..223117 (-) 624 WP_009117465.1 PilN domain-containing protein -
  H3L96_RS01185 (H3L96_01185) pilM 223119..224216 (-) 1098 WP_182073223.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 720 a.a.        Molecular weight: 78510.74 Da        Isoelectric Point: 9.5279

>NTDB_id=470689 H3L96_RS01165 WP_040667189.1 219119..221281(-) (pilQ) [Neisseria wadsworthii strain DSM 22245]
MKPISMKTISAISLGLAMQTSAFAGNITDINVSTLPNNQKIIKIKFDRDVVSPSGFVTNSPARISLDFPTTDVALQQPVL
EYADPLLNQISAVKNGSQTRVVLSLNKAGKYTSEIKGNEVWVYVNEAPEAPAASSQPTASDRIIVKKQEQAVSSASVDFR
KGNGNAGIVDISAPSFNGNPSIKRQNDRVVITLKNHPLPAQAQRSLDVSDFNTPVRGIVLKRIGNDTEIVIRNKGSWDVR
EKISGGRMSFEVLPKANVADAGLQNNKRNKNFTGRRVSFDFQDVEVRTILQILAKESGMNIVASDSVSGKMTLSLKDVPW
DQALDLVLEARNLDMRRQGNIINVAPRDELLAKDKATLQAQNEINDLGPLYSQTFQLKYKNVEEFRKVLRLEEGGSNNTA
NSILSKRGSALIDPGTNTLIITDNNTVIRKFQKLIEELDVPTRQVMVEARIVRASDGFSRDIGVKFGYGGSNGTNSWGNN
LNNAIKNNNAYGDNRRAEYNALASALDSGSRYQAPTPTPYSWDPNVNLPIAAATSSVALIHKMASGALSLELQAQQAQNK
AKTISNPRVLTQDRKEAVIESGTEIPYTSETSSGATDVSFKKAVLGLRVTPHITPDGQIIMDVKINKDSVNQSCGGSNGE
PCIDTNNLETRAMVEDGGTLVLGGIYEEINSNGIRKVPLLGDIPVVGNLFKSRTRNEERSELLIFITPRIIDYQGSNLRY

Nucleotide


Download         Length: 2163 bp        

>NTDB_id=470689 H3L96_RS01165 WP_040667189.1 219119..221281(-) (pilQ) [Neisseria wadsworthii strain DSM 22245]
ATGAAACCTATCAGTATGAAAACTATTTCAGCTATTAGCTTAGGTTTGGCTATGCAAACCTCAGCTTTTGCAGGCAACAT
TACAGATATTAATGTATCAACGTTGCCTAATAATCAAAAAATTATCAAAATCAAATTTGACCGCGATGTTGTGTCCCCGA
GTGGTTTTGTAACCAATTCACCTGCTCGCATTTCACTGGATTTTCCGACAACTGATGTTGCTTTGCAGCAGCCTGTTTTG
GAATACGCAGATCCTTTATTGAACCAAATCAGTGCTGTTAAAAACGGCAGTCAAACAAGAGTGGTTCTAAGCTTGAATAA
AGCGGGTAAATATACTTCTGAGATCAAAGGTAATGAAGTATGGGTTTACGTGAATGAGGCACCTGAAGCTCCCGCTGCAT
CAAGTCAACCAACTGCCTCTGACCGTATAATTGTGAAAAAACAGGAGCAGGCCGTAAGTTCTGCATCGGTTGATTTCCGT
AAAGGTAATGGTAATGCAGGTATTGTAGATATTAGTGCGCCTTCATTTAATGGTAATCCTTCTATAAAACGCCAGAATGA
TCGTGTTGTGATTACTTTGAAAAATCATCCATTGCCCGCACAAGCTCAACGCAGCTTAGATGTTTCTGATTTTAATACAC
CGGTTCGTGGTATTGTATTGAAACGTATTGGTAATGACACCGAAATCGTTATCAGAAATAAAGGTAGCTGGGATGTGCGT
GAAAAGATTTCCGGCGGACGCATGTCTTTTGAAGTTTTACCGAAGGCAAATGTCGCAGATGCGGGATTGCAAAATAATAA
AAGAAATAAAAACTTTACTGGCCGCAGGGTATCTTTTGATTTCCAAGACGTAGAAGTACGCACGATCTTGCAAATTTTGG
CTAAAGAGTCTGGTATGAATATTGTAGCCAGCGACAGTGTAAGTGGCAAAATGACTCTCAGCTTGAAAGATGTGCCGTGG
GATCAGGCTTTAGATTTGGTGTTGGAAGCCCGTAATCTGGATATGCGCCGACAAGGCAATATTATCAATGTCGCTCCGCG
TGATGAGTTGTTAGCTAAAGATAAAGCCACATTGCAAGCTCAGAATGAAATCAATGATTTAGGTCCATTGTATTCTCAAA
CATTCCAGCTTAAATACAAAAACGTAGAAGAGTTCCGTAAAGTTTTGAGGCTGGAGGAAGGTGGTAGCAACAATACTGCA
AACAGCATTTTAAGTAAACGGGGCAGTGCGTTAATTGATCCGGGTACAAATACACTGATTATTACCGATAATAATACAGT
TATCCGGAAATTCCAAAAGTTGATAGAGGAATTGGACGTTCCTACTCGTCAAGTGATGGTAGAAGCTCGAATTGTGCGTG
CTTCTGACGGATTCTCACGTGATATTGGTGTGAAGTTTGGCTATGGTGGTTCAAATGGAACCAATAGCTGGGGAAATAAC
CTTAACAATGCTATTAAAAACAATAATGCTTATGGTGATAACAGACGTGCGGAATACAATGCCCTAGCAAGTGCACTTGA
TAGTGGTAGCAGATATCAAGCACCAACACCAACACCTTACTCATGGGATCCTAACGTTAACTTGCCTATTGCGGCAGCCA
CTTCCAGCGTTGCGTTGATTCATAAAATGGCTTCGGGTGCTTTGAGTTTGGAATTACAAGCCCAACAGGCACAAAATAAG
GCGAAAACTATTTCTAATCCGCGCGTTTTGACGCAAGACAGGAAAGAAGCCGTAATTGAGTCTGGTACTGAGATTCCGTA
CACTTCGGAAACATCCAGCGGTGCAACTGATGTATCGTTCAAAAAAGCTGTGTTGGGCTTACGTGTAACGCCGCACATTA
CACCCGACGGTCAAATCATTATGGATGTGAAAATCAATAAAGACTCAGTAAATCAAAGCTGCGGTGGTAGCAATGGTGAA
CCTTGTATTGATACCAATAACTTGGAAACCCGAGCGATGGTTGAAGATGGCGGCACTTTAGTTCTTGGCGGTATTTATGA
AGAAATTAATTCTAACGGTATCAGAAAAGTGCCTCTGTTGGGTGATATTCCTGTGGTTGGTAACTTGTTTAAATCACGTA
CCCGCAACGAAGAGAGAAGTGAGCTGTTGATTTTTATCACGCCGCGCATCATTGATTATCAAGGTAGTAATTTACGCTAT
TAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(555-712)

AMIN domain (AMIN)

(38-115)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-444)

Secretin and TonB N terminus short domain (STN)

(300-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

54.886

100

0.569
  pilQ Neisseria meningitidis MC58

57.343

79.444

0.456
  pilQ Neisseria meningitidis M1080

57.168

79.444

0.454