Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H3L98_RS06885 Genome accession   NZ_CP059563
Coordinates   1289028..1289555 (-) Length   175 a.a.
NCBI ID   WP_027021356.1    Uniprot ID   A0AAE9HW40
Organism   Conchiformibius steedae strain DSM 2580     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1284028..1294555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L98_RS06865 (H3L98_06870) qatD 1284234..1284959 (-) 726 WP_027021352.1 Qat anti-phage system TatD family nuclease QatD -
  H3L98_RS06870 (H3L98_06875) qatC 1284956..1286272 (-) 1317 WP_034333013.1 Qat anti-phage system QueC-like protein QatC -
  H3L98_RS06875 (H3L98_06880) - 1286272..1287012 (-) 741 WP_027021354.1 hypothetical protein -
  H3L98_RS06880 (H3L98_06885) - 1287016..1288800 (-) 1785 WP_246327796.1 KAP family P-loop NTPase fold protein -
  H3L98_RS06885 (H3L98_06890) ssb 1289028..1289555 (-) 528 WP_027021356.1 single-stranded DNA-binding protein Machinery gene
  H3L98_RS06890 (H3L98_06895) - 1289561..1290955 (-) 1395 WP_027021357.1 MFS transporter -
  H3L98_RS06895 (H3L98_06900) - 1291120..1291767 (-) 648 WP_246327797.1 CDP-alcohol phosphatidyltransferase family protein -
  H3L98_RS06900 (H3L98_06905) - 1291992..1293572 (+) 1581 WP_027021358.1 AbgT family transporter -
  H3L98_RS06905 (H3L98_06910) - 1293804..1294367 (+) 564 WP_027021359.1 YceI family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18782.96 Da        Isoelectric Point: 5.2778

>NTDB_id=470654 H3L98_RS06885 WP_027021356.1 1289028..1289555(-) (ssb) [Conchiformibius steedae strain DSM 2580]
MSVNKVILVGRLGRDPEVRYMPNGEAVCNFSIATDESWTDKQTGQKVSKTEWHNITLYRRTAEVAGQYLKKGSLVYIEGK
IQSRKYTGKDGIERTAYDIIGNEMRMLGGKNDNGGGSAPYDGGQSYGASSAAAPAATAYAPPPLPASYDAPAAPQQRPAV
SAPPPVEDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=470654 H3L98_RS06885 WP_027021356.1 1289028..1289555(-) (ssb) [Conchiformibius steedae strain DSM 2580]
ATGTCTGTAAACAAAGTGATATTGGTTGGACGTTTGGGGCGCGACCCTGAAGTGCGTTATATGCCCAACGGCGAAGCGGT
GTGCAATTTTTCCATTGCCACCGATGAAAGCTGGACCGATAAGCAAACGGGACAAAAGGTCAGCAAAACCGAATGGCACA
ATATTACCCTGTACCGCCGTACTGCCGAAGTTGCCGGACAGTATTTGAAAAAAGGCAGTTTGGTGTATATTGAAGGCAAA
ATCCAAAGCCGCAAATACACAGGCAAAGATGGCATTGAGCGCACTGCTTACGACATTATCGGCAACGAAATGAGAATGCT
CGGCGGTAAAAACGACAACGGTGGTGGCAGCGCCCCGTATGATGGTGGTCAGTCTTATGGTGCATCATCTGCCGCCGCGC
CTGCCGCAACAGCTTATGCCCCGCCGCCGCTACCCGCATCGTATGACGCACCCGCTGCGCCGCAACAACGCCCCGCCGTA
TCTGCACCCCCGCCAGTGGAAGATATCGACGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

67.232

100

0.68
  ssb Neisseria meningitidis MC58

66.102

100

0.669
  ssb Vibrio cholerae strain A1552

47.802

100

0.497
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.469