Detailed information NTG0470648

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H3L98_RS05210
• Genome accession: NZ_CP059563
• Coordinates: 938402..939313 (-)
• Length: 303 a.a.
• NCBI ID: WP_027021065.1
• Uniprot ID: -
• Organism: Conchiformibius steedae strain DSM 2580
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 933402..944313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H3L98_RS05185 (H3L98_05190)	-	933721..934383 (-)	663	WP_027021061.1	OmpA family protein	-
H3L98_RS05190 (H3L98_05195)	-	934764..935708 (+)	945	WP_027021062.1	LysR substrate-binding domain-containing protein	-
H3L98_RS05195 (H3L98_05200)	-	935739..936974 (+)	1236	WP_169733441.1	YihY family inner membrane protein	-
H3L98_RS05200 (H3L98_05205)	zapD	937019..937768 (-)	750	WP_027021063.1	cell division protein ZapD	-
H3L98_RS05205 (H3L98_05210)	coaE	937793..938398 (-)	606	WP_027021064.1	dephospho-CoA kinase	-
H3L98_RS05210 (H3L98_05215)	pilD	938402..939313 (-)	912	WP_027021065.1	prepilin peptidase	Machinery gene
H3L98_RS05215 (H3L98_05220)	pilG	939318..940586 (-)	1269	WP_027021066.1	type II secretion system F family protein	Machinery gene
H3L98_RS05220 (H3L98_05225)	pilF	940675..942354 (-)	1680	WP_027021067.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H3L98_RS05225 (H3L98_05230)	mtgA	942482..943168 (-)	687	WP_027021068.1	monofunctional biosynthetic peptidoglycan transglycosylase	-
H3L98_RS05230 (H3L98_05235)	aroE	943306..944106 (-)	801	Protein_915	shikimate dehydrogenase	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 32701.15 Da
• Isoelectric Point: 8.9510

>NTDB_id=470648 H3L98_RS05210 WP_027021065.1 938402..939313(-) (pilD) [Conchiformibius steedae strain DSM 2580]
MEETVFVTAAAALFGLLVGSFLNVVIYRIPVMMEREYALAAKQMLEAAVKQVIAWLPADKTAEAQKLLGVPDTPEPAFNL
ITPRSRCGNCGAPVKAWQNIPVISWLLLRGKCAGCRAPISVRYPLVEMLTAVLFALVAWRYGGSAVALWGCVLTAFVLAL
TFIDADTQLLPDMLTLPLLWLGLLFNLHTGFVPLSQAVWGAVAGYMSLWLLYHLFKLLTGKEGMGYGDFKMLAAIGAWVG
AGMLPVVVLAASLVGIAAALLKRVSRGQPMAFGPCLAVAGWLVFLFHAHTGTAIAWWLHKSGF

Nucleotide

• Length: 912 bp

>NTDB_id=470648 H3L98_RS05210 WP_027021065.1 938402..939313(-) (pilD) [Conchiformibius steedae strain DSM 2580]
ATGGAAGAAACCGTTTTCGTCACTGCCGCCGCAGCCCTGTTCGGGCTGCTGGTGGGCAGTTTTTTGAATGTGGTGATTTA
CCGCATTCCCGTGATGATGGAACGCGAATACGCTTTGGCTGCCAAGCAGATGTTGGAAGCGGCAGTCAAACAGGTGATTG
CGTGGTTGCCCGCCGACAAAACTGCTGAAGCGCAAAAGCTGTTGGGTGTGCCGGACACGCCCGAACCTGCGTTTAATCTG
ATTACGCCGCGTTCGCGCTGCGGCAATTGCGGTGCGCCTGTAAAAGCATGGCAGAACATTCCTGTTATCAGTTGGTTATT
GTTGCGCGGAAAATGTGCTGGCTGTCGTGCGCCCATTTCGGTGCGTTATCCGCTGGTGGAAATGCTGACGGCGGTATTGT
TCGCGCTGGTGGCGTGGCGTTACGGCGGCAGCGCGGTGGCGTTGTGGGGTTGTGTGCTGACGGCGTTTGTGTTGGCATTA
ACTTTTATTGATGCCGATACGCAATTGTTGCCCGATATGCTGACTTTGCCGCTGCTGTGGCTGGGCTTGCTGTTTAACCT
GCACACGGGCTTTGTGCCGCTGTCGCAAGCGGTGTGGGGCGCAGTAGCAGGCTACATGAGTTTGTGGCTGCTGTATCATC
TGTTTAAGCTGCTGACAGGCAAAGAAGGCATGGGCTACGGCGATTTTAAAATGCTGGCAGCCATCGGCGCATGGGTGGGC
GCAGGGATGTTGCCTGTGGTGGTGTTGGCGGCTTCGCTGGTGGGGATTGCAGCAGCATTGCTCAAACGGGTATCACGCGG
ACAACCGATGGCGTTTGGTCCGTGTTTGGCGGTGGCGGGCTGGCTGGTGTTCCTGTTTCACGCGCACACAGGCACGGCAA
TTGCTTGGTGGCTGCACAAATCGGGCTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-141)

• Type IV leader peptidase family (Peptidase_A24) (151-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	54.949	96.7	0.531
pilD	Vibrio cholerae strain A1552	50.704	93.729	0.475
pilD	Acinetobacter baumannii D1279779	47.482	91.749	0.436
pilD	Acinetobacter nosocomialis M2	47.482	91.749	0.436
pilD	Vibrio campbellii strain DS40M4	46.403	91.749	0.426