Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPPN135_RS00210 | Genome accession | NC_017379 |
| Coordinates | 37298..38434 (+) | Length | 378 a.a. |
| NCBI ID | WP_001045878.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Puno135 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32298..43434
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPN135_RS00175 (HPPN135_00165) | panD | 32749..33099 (+) | 351 | WP_000142283.1 | aspartate 1-decarboxylase | - |
| HPPN135_RS00180 (HPPN135_00170) | - | 33110..33403 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPPN135_RS00185 (HPPN135_00175) | - | 33403..34410 (+) | 1008 | WP_000233426.1 | PDZ domain-containing protein | - |
| HPPN135_RS00190 (HPPN135_00180) | comB6 | 34418..35473 (+) | 1056 | WP_000786661.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPPN135_RS00195 (HPPN135_00185) | comB7 | 35490..35603 (+) | 114 | WP_001217868.1 | hypothetical protein | Machinery gene |
| HPPN135_RS00200 (HPPN135_00190) | comB8 | 35600..36343 (+) | 744 | WP_000660514.1 | type IV secretion system protein | Machinery gene |
| HPPN135_RS00205 (HPPN135_00195) | comB9 | 36343..37305 (+) | 963 | WP_014537031.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPPN135_RS00210 (HPPN135_00200) | comB10 | 37298..38434 (+) | 1137 | WP_001045878.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPPN135_RS00215 (HPPN135_00205) | - | 38504..39916 (+) | 1413 | WP_000694825.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPPN135_RS00220 (HPPN135_00210) | gmd | 39931..41076 (+) | 1146 | WP_000659843.1 | GDP-mannose 4,6-dehydratase | - |
| HPPN135_RS00225 (HPPN135_00215) | - | 41069..42001 (+) | 933 | WP_001002508.1 | GDP-L-fucose synthase family protein | - |
| HPPN135_RS00230 (HPPN135_00225) | hypE | 42298..43296 (-) | 999 | WP_000378788.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42158.73 Da Isoelectric Point: 9.9143
>NTDB_id=47064 HPPN135_RS00210 WP_001045878.1 37298..38434(+) (comB10) [Helicobacter pylori Puno135]
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKTLQEQLKA
ALKALNSKEMNSSKEETFKNPPTDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKTLQEQLKA
ALKALNSKEMNSSKEETFKNPPTDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=47064 HPPN135_RS00210 WP_001045878.1 37298..38434(+) (comB10) [Helicobacter pylori Puno135]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATAAAAACCTTACAAGAGCAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCACAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATAAAAACCTTACAAGAGCAGCTAAAAGCC
GCCTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAATCCTCCCACAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.238 |
100 |
0.952 |