Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPPN135_RS00195 | Genome accession | NC_017379 |
| Coordinates | 35490..35603 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217868.1 | Uniprot ID | A0AAE7DTV1 |
| Organism | Helicobacter pylori Puno135 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30490..40603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPN135_RS00170 (HPPN135_00160) | - | 30537..32759 (+) | 2223 | WP_001051546.1 | AAA family ATPase | - |
| HPPN135_RS00175 (HPPN135_00165) | panD | 32749..33099 (+) | 351 | WP_000142283.1 | aspartate 1-decarboxylase | - |
| HPPN135_RS00180 (HPPN135_00170) | - | 33110..33403 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPPN135_RS00185 (HPPN135_00175) | - | 33403..34410 (+) | 1008 | WP_000233426.1 | PDZ domain-containing protein | - |
| HPPN135_RS00190 (HPPN135_00180) | comB6 | 34418..35473 (+) | 1056 | WP_000786661.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPPN135_RS00195 (HPPN135_00185) | comB7 | 35490..35603 (+) | 114 | WP_001217868.1 | hypothetical protein | Machinery gene |
| HPPN135_RS00200 (HPPN135_00190) | comB8 | 35600..36343 (+) | 744 | WP_000660514.1 | type IV secretion system protein | Machinery gene |
| HPPN135_RS00205 (HPPN135_00195) | comB9 | 36343..37305 (+) | 963 | WP_014537031.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPPN135_RS00210 (HPPN135_00200) | comB10 | 37298..38434 (+) | 1137 | WP_001045878.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPPN135_RS00215 (HPPN135_00205) | - | 38504..39916 (+) | 1413 | WP_000694825.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4323.29 Da Isoelectric Point: 9.3572
>NTDB_id=47061 HPPN135_RS00195 WP_001217868.1 35490..35603(+) (comB7) [Helicobacter pylori Puno135]
MRIFFVIMGIMLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGIMLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=47061 HPPN135_RS00195 WP_001217868.1 35490..35603(+) (comB7) [Helicobacter pylori Puno135]
ATGAGAATTTTTTTTGTTATTATGGGAATCATGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACACTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGAATCATGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACACTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
91.892 |
100 |
0.919 |