Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPPN135_RS00200 Genome accession   NC_017379
Coordinates   35600..36343 (+) Length   247 a.a.
NCBI ID   WP_000660514.1    Uniprot ID   -
Organism   Helicobacter pylori Puno135     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30600..41343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN135_RS00175 (HPPN135_00165) panD 32749..33099 (+) 351 WP_000142283.1 aspartate 1-decarboxylase -
  HPPN135_RS00180 (HPPN135_00170) - 33110..33403 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HPPN135_RS00185 (HPPN135_00175) - 33403..34410 (+) 1008 WP_000233426.1 PDZ domain-containing protein -
  HPPN135_RS00190 (HPPN135_00180) comB6 34418..35473 (+) 1056 WP_000786661.1 P-type conjugative transfer protein TrbL Machinery gene
  HPPN135_RS00195 (HPPN135_00185) comB7 35490..35603 (+) 114 WP_001217868.1 hypothetical protein Machinery gene
  HPPN135_RS00200 (HPPN135_00190) comB8 35600..36343 (+) 744 WP_000660514.1 type IV secretion system protein Machinery gene
  HPPN135_RS00205 (HPPN135_00195) comB9 36343..37305 (+) 963 WP_014537031.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPPN135_RS00210 (HPPN135_00200) comB10 37298..38434 (+) 1137 WP_001045878.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPPN135_RS00215 (HPPN135_00205) - 38504..39916 (+) 1413 WP_000694825.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPPN135_RS00220 (HPPN135_00210) gmd 39931..41076 (+) 1146 WP_000659843.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28761.05 Da        Isoelectric Point: 9.2316

>NTDB_id=47062 HPPN135_RS00200 WP_000660514.1 35600..36343(+) (comB8) [Helicobacter pylori Puno135]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEYLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=47062 HPPN135_RS00200 WP_000660514.1 35600..36343(+) (comB8) [Helicobacter pylori Puno135]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGATATGCAAAGCGTGTTCAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTATCTTAGCGATCGTTTTAATCAGTGTTCTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCCCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAATATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATCTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCAGCTAAACTCATGAATGAAAACAAACTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment