Detailed information NTG0047063

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPPN135_RS00205
• Genome accession: NC_017379
• Coordinates: 36343..37305 (+)
• Length: 320 a.a.
• NCBI ID: WP_014537031.1
• Uniprot ID: -
• Organism: Helicobacter pylori Puno135
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31343..42305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPN135_RS00175 (HPPN135_00165)	panD	32749..33099 (+)	351	WP_000142283.1	aspartate 1-decarboxylase	-
HPPN135_RS00180 (HPPN135_00170)	-	33110..33403 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HPPN135_RS00185 (HPPN135_00175)	-	33403..34410 (+)	1008	WP_000233426.1	PDZ domain-containing protein	-
HPPN135_RS00190 (HPPN135_00180)	comB6	34418..35473 (+)	1056	WP_000786661.1	P-type conjugative transfer protein TrbL	Machinery gene
HPPN135_RS00195 (HPPN135_00185)	comB7	35490..35603 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HPPN135_RS00200 (HPPN135_00190)	comB8	35600..36343 (+)	744	WP_000660514.1	type IV secretion system protein	Machinery gene
HPPN135_RS00205 (HPPN135_00195)	comB9	36343..37305 (+)	963	WP_014537031.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPPN135_RS00210 (HPPN135_00200)	comB10	37298..38434 (+)	1137	WP_001045878.1	DNA type IV secretion system protein ComB10	Machinery gene
HPPN135_RS00215 (HPPN135_00205)	-	38504..39916 (+)	1413	WP_000694825.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPPN135_RS00220 (HPPN135_00210)	gmd	39931..41076 (+)	1146	WP_000659843.1	GDP-mannose 4,6-dehydratase	-
HPPN135_RS00225 (HPPN135_00215)	-	41069..42001 (+)	933	WP_001002508.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36818.36 Da
• Isoelectric Point: 9.3455

>NTDB_id=47063 HPPN135_RS00205 WP_014537031.1 36343..37305(+) (comB9) [Helicobacter pylori Puno135]
MRKVLYALVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=47063 HPPN135_RS00205 WP_014537031.1 36343..37305(+) (comB9) [Helicobacter pylori Puno135]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAATGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCTATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACGTTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAAACCCTTAAA
GGAAGAAAAAGAAGAAACCAAAGAAGAAGAAACTATAACGATTGGCGATAGCACTAATGCGATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGACAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944