Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H2677_RS00900 Genome accession   NZ_CP059558
Coordinates   195201..195785 (+) Length   194 a.a.
NCBI ID   WP_004909838.1    Uniprot ID   A0A8I0V5Q1
Organism   Acinetobacter junii strain YR7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 190201..200785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS00880 (H2677_00880) - 191208..191561 (+) 354 WP_004951378.1 DUF1304 domain-containing protein -
  H2677_RS00885 (H2677_00885) tenA 191716..192390 (-) 675 WP_212638961.1 thiaminase II -
  H2677_RS00890 (H2677_00890) - 192565..193647 (+) 1083 WP_004909842.1 DUF475 domain-containing protein -
  H2677_RS00895 (H2677_00895) - 193784..195148 (+) 1365 WP_005403380.1 MFS transporter -
  H2677_RS00900 (H2677_00900) ssb 195201..195785 (+) 585 WP_004909838.1 single-stranded DNA-binding protein Machinery gene
  H2677_RS00905 (H2677_00905) - 196292..197734 (+) 1443 WP_212638962.1 amino acid permease -
  H2677_RS00910 (H2677_00910) - 197807..199306 (-) 1500 WP_212638963.1 PLP-dependent aminotransferase family protein -
  H2677_RS00915 (H2677_00915) gabT 199461..200753 (+) 1293 WP_212638964.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21241.96 Da        Isoelectric Point: 6.7308

>NTDB_id=470576 H2677_RS00900 WP_004909838.1 195201..195785(+) (ssb) [Acinetobacter junii strain YR7]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=470576 H2677_RS00900 WP_004909838.1 195201..195785(+) (ssb) [Acinetobacter junii strain YR7]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACACAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTCTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCGAAAGTTTATATCGAAGGT
TCATTGCGTACGCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGTCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAACACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCGGCTCCAGCTGA
CTTAGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392