Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H2789_RS16990 Genome accession   NZ_CP059549
Coordinates   3598690..3599016 (-) Length   108 a.a.
NCBI ID   WP_003654486.1    Uniprot ID   A0AAW8QRU4
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3593690..3604016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS16970 (H2789_16950) - 3593800..3594429 (-) 630 WP_347019028.1 FHA domain-containing protein -
  H2789_RS16975 (H2789_16955) gspD 3594471..3596732 (-) 2262 WP_347019029.1 type II secretion system secretin GspD -
  H2789_RS16980 (H2789_16960) - 3596774..3597610 (-) 837 WP_347019030.1 type II secretion system protein N -
  H2789_RS16985 (H2789_16965) gspN 3597613..3598356 (-) 744 WP_005037277.1 type II secretion system protein N -
  H2789_RS16990 (H2789_16970) hns 3598690..3599016 (-) 327 WP_003654486.1 H-NS histone family protein Regulator
  H2789_RS16995 (H2789_16975) - 3599211..3599651 (-) 441 WP_003654484.1 thioesterase family protein -
  H2789_RS17000 (H2789_16980) - 3599659..3600852 (-) 1194 WP_347019031.1 heme biosynthesis protein HemY -
  H2789_RS17005 (H2789_16985) gerPC 3600862..3601704 (-) 843 WP_347019032.1 spore germination protein GerPC -
  H2789_RS17010 (H2789_16990) - 3601713..3602480 (-) 768 WP_347019033.1 uroporphyrinogen-III synthase -
  H2789_RS17015 (H2789_16995) hemC 3602484..3603401 (-) 918 WP_035362332.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12506.17 Da        Isoelectric Point: 5.0524

>NTDB_id=470512 H2789_RS16990 WP_003654486.1 3598690..3599016(-) (hns) [Acinetobacter calcoaceticus strain NCIMB13260]
MKPDISELSVEELKRLQEEAEALIVSKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=470512 H2789_RS16990 WP_003654486.1 3598690..3599016(-) (hns) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGTTTACAAGAAGAAGCTGAAGCTTTAATTGTAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATCGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTTGAACCGCGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGCCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

98.148

100

0.981