Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   H2789_RS16475 Genome accession   NZ_CP059549
Coordinates   3485721..3487949 (+) Length   742 a.a.
NCBI ID   WP_347018993.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480721..3492949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS16450 (H2789_16430) - 3482224..3482562 (-) 339 WP_002114937.1 tRNA-binding protein -
  H2789_RS16455 (H2789_16435) - 3482806..3483069 (+) 264 WP_003654645.1 DUF2798 domain-containing protein -
  H2789_RS16460 (H2789_16440) - 3483134..3483478 (-) 345 WP_003654643.1 hypothetical protein -
  H2789_RS16465 (H2789_16445) gspG 3483747..3484343 (-) 597 WP_209831629.1 type II secretion system major pseudopilin GspG -
  H2789_RS16470 (H2789_16450) gspF 3484367..3485572 (-) 1206 WP_005045048.1 type II secretion system inner membrane protein GspF -
  H2789_RS16475 (H2789_16455) priA 3485721..3487949 (+) 2229 WP_347018993.1 primosomal protein N' Machinery gene
  H2789_RS16480 (H2789_16460) - 3488026..3489870 (+) 1845 WP_347018994.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  H2789_RS16485 (H2789_16465) hslO 3490035..3490910 (+) 876 WP_004640903.1 Hsp33 family molecular chaperone HslO -
  H2789_RS16490 (H2789_16470) - 3491048..3491659 (+) 612 WP_347018995.1 LysE family translocator -
  H2789_RS16495 (H2789_16475) - 3491806..3492762 (+) 957 WP_347018996.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84076.89 Da        Isoelectric Point: 8.5616

>NTDB_id=470508 H2789_RS16475 WP_347018993.1 3485721..3487949(+) (priA) [Acinetobacter calcoaceticus strain NCIMB13260]
MTITPKPDSAVYRVRVAVPVHLYDTFDYTLTEAQYERAQVGSRVAISFGRQNLIGIITEKVNPHEPFTGNFQLKAISELL
DEQPILDEQVLSLLTWSAQYYQFPVGEVMQTALPAILRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPS
GTTENILNLSGVETATLKALEKKGLVECTLEPHDFSPTPVQLAQMPLTLNEDQKQATQQVIKAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTSLQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDQDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLQFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=470508 H2789_RS16475 WP_347018993.1 3485721..3487949(+) (priA) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGACCATAACGCCAAAGCCTGATTCAGCTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCGAAGCACAATATGAACGGGCTCAAGTAGGCTCACGCGTCGCTATTTCATTTGGGCGACAAAACCTAA
TTGGTATCATCACTGAAAAAGTGAATCCACATGAGCCATTTACAGGCAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAGTTGGCGA
GGTCATGCAAACCGCCCTTCCGGCTATACTGCGTCAGGGCAAACCGATGGATGTTTTGTTCCATCTCTGGAAAATCACTC
CATGCGACAATGTTGAGGCACTGCTTAAACGTTCAGTAAAGCAACAAGATGCTTATCAGATTTTAAAGTTACATCCCTCT
GGAACAACAGAGAACATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTAAAAGCACTAGAAAAGAAAGGTTTGGTTGA
ATGTACGCTTGAACCACACGACTTTAGCCCTACACCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGATCAAA
AGCAAGCAACCCAACAGGTTATTAAAGCACAGCATCAATACCAAGCATTTTTGCTAGATGGCTTAACGGGTAGCGGTAAA
ACTGAAGTTTATCTACACATCATGCATGAGGTGCTAAAGCAAGGTAAACAAGTACTGGTTTTGGTGCCTGAAATTGGTTT
AACTCCTCAAACCATTTCGCGTTTTAAGTCTCGTTTTAATTGTGATATTGCTTTATTGCACTCTGGCCTTAACGATTCCA
AACGCTTACAAGCATGGCAGCAGGCACAGACCGGAAAAGCATCTATTATTTTAGGGACACGCTCAGCGATCTATACACCG
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACCTGTCTTATAAACAGCAAGAAGGCTTCCGTTACCATGC
GCGTGATGTCGCACTGTACCGAGGGCACTTACAAAGCTGCCCAGTGATTTTAGGTTCGGCAACACCAAGTATTGATAGTT
ATTATTTGGTCGAAACTGGCAAGTTAACTTCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTCTCATTGAACAAATCAAACATACTTTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCCA
ATTGTCCACATTGTGATGCACATTTTACTTTGCATACCCAGCCTTATTCTTATTTACATTGCCACCACTGTGGAACCATT
CATCGCCTACCAGATCATTGCCCTGAGTGTCAGCAAAAGAGCTTAAAAACACTAGGGGCAGGAACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCAGATCAGGACGTGATTCGGGTTGATCGTGACAGTACCAGTCGTGTAGGAAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTACTCGGCACTCAAATGTTGGCAAAAGGTCACCATTTCCCA
CATGTGACTTTGGTTGCCATTTTAGATATTGATGCAGGGTTACTCAGCGTAGACATCCGTGCGCCAGAACGTACTGCACA
GTTAATTGTACAAGTAGCCGGCCGTGCAGGCCGTGGTGAGCATAAAGGCCATGTTTATTTGCAAACATTAAGGCCAGATC
ACCCACTCCTAACCACACTCATCGAAAAAGACTATCGCGCGGTTGCCAAACAAACATTGGCTGAACGTAAAGTTGCTTTG
CTACCGCCTTATCGCTATGCAGTACTCATACGTGCAGAGTCGAAAGATCGAGACTATACCTTACAATTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAGTCGCTGGTGAGATTGTTGATATTTGGGGACCTATTCCAGCCCCTATGGAACGTAAAGCGG
GACGCTATCGTGCCCACATGGTGATTTTATCTGCCGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCTCAA
TTGGTTCATGCCCCAAGACAGCATCAACTCAGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

95.418

100

0.954