Detailed information NTG0470511

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H2789_RS16680
• Genome accession: NZ_CP059549
• Coordinates: 3537618..3538478 (+)
• Length: 286 a.a.
• NCBI ID: WP_004640843.1
• Uniprot ID: -
• Organism: Acinetobacter calcoaceticus strain NCIMB13260
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3532618..3543478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H2789_RS16660 (H2789_16640)	secG	3533236..3533565 (-)	330	WP_092710024.1	preprotein translocase subunit SecG	-
H2789_RS16665 (H2789_16645)	tpiA	3533578..3534372 (-)	795	WP_347019007.1	triose-phosphate isomerase	-
H2789_RS16670 (H2789_16650)	pilB	3534664..3536364 (+)	1701	WP_347019008.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H2789_RS16675 (H2789_16655)	pilC	3536392..3537618 (+)	1227	WP_004640845.1	type II secretion system F family protein	Machinery gene
H2789_RS16680 (H2789_16660)	pilD	3537618..3538478 (+)	861	WP_004640843.1	A24 family peptidase	Machinery gene
H2789_RS16685 (H2789_16665)	coaE	3538480..3539076 (+)	597	WP_347019009.1	dephospho-CoA kinase	-
H2789_RS16690 (H2789_16670)	-	3539073..3539987 (-)	915	WP_347019010.1	DMT family transporter	-
H2789_RS16695 (H2789_16675)	rlmB	3540022..3540771 (-)	750	WP_005037200.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H2789_RS16700 (H2789_16680)	-	3540874..3541200 (-)	327	WP_003654567.1	pyrimidine/purine nucleoside phosphorylase	-
H2789_RS16705 (H2789_16685)	-	3541277..3542587 (-)	1311	WP_347019011.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32060.47 Da
• Isoelectric Point: 6.8115

>NTDB_id=470511 H2789_RS16680 WP_004640843.1 3537618..3538478(+) (pilD) [Acinetobacter calcoaceticus strain NCIMB13260]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPQCHQP
IRWYQNIPVVSWLVLKGKCGHCEHAISMRYPAIELLTMACSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTTPTSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=470511 H2789_RS16680 WP_004640843.1 3537618..3538478(+) (pilD) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTGTGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGTTACTCA
ATCCTGAACAACCAATCATTGACCATGAAAAGCTAACATTAAGTAAGCCCGCTTCATCATGCCCCCAATGCCACCAGCCC
ATTCGCTGGTATCAAAATATTCCTGTCGTCAGTTGGTTAGTTTTAAAAGGTAAATGTGGGCATTGTGAGCATGCAATTAG
CATGCGCTACCCAGCCATCGAACTATTAACAATGGCATGTTCACTGGTTGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTGACTTGGGTTTTAATTGCTTTAACATTTATTGATTTTGATACTCAGCTGCTACCCGACCGT
TTTACCTTACCTTTGGCCGCACTGGGTTTAGGCATTAATACCTTTAACATATACACCACACCCACTTCAGCTATTTGGGG
TTACTTAATTGGTTTTTTATGCCTGTGGATTGTGTATTACCTATTTAAAGTAATTACCGGCAAAGAAGGCATGGGCTACG
GCGACTTTAAGTTGCTTGCGGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCATATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Acinetobacter baumannii D1279779	95.105	100	0.951
pilD	Vibrio cholerae strain A1552	52.574	95.105	0.5
pilD	Vibrio campbellii strain DS40M4	51.648	95.455	0.493
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437