Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H2789_RS00910 Genome accession   NZ_CP059549
Coordinates   204589..205182 (+) Length   197 a.a.
NCBI ID   WP_004639902.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199589..210182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS00885 (H2789_00890) - 199659..200465 (-) 807 WP_347019335.1 SDR family oxidoreductase -
  H2789_RS00890 (H2789_00895) - 200568..200939 (-) 372 WP_056482224.1 MerR family transcriptional regulator -
  H2789_RS00895 (H2789_00900) tenA 201006..201680 (-) 675 WP_133747352.1 thiaminase II -
  H2789_RS00900 (H2789_00905) - 201943..203025 (+) 1083 WP_045433654.1 DUF475 domain-containing protein -
  H2789_RS00905 (H2789_00910) - 203173..204537 (+) 1365 WP_005038085.1 MFS transporter -
  H2789_RS00910 (H2789_00915) ssb 204589..205182 (+) 594 WP_004639902.1 single-stranded DNA-binding protein Machinery gene
  H2789_RS00915 (H2789_00920) - 205223..205546 (-) 324 WP_017388641.1 AzlD domain-containing protein -
  H2789_RS00920 (H2789_00925) - 205543..206238 (-) 696 WP_005038090.1 AzlC family ABC transporter permease -
  H2789_RS00925 (H2789_00930) - 206307..206855 (+) 549 WP_017388639.1 XRE family transcriptional regulator -
  H2789_RS00930 (H2789_00935) - 207182..208624 (+) 1443 WP_045433636.1 amino acid permease -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21366.15 Da        Isoelectric Point: 6.4832

>NTDB_id=470478 H2789_RS00910 WP_004639902.1 204589..205182(+) (ssb) [Acinetobacter calcoaceticus strain NCIMB13260]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYNQNSGGGYGSN
PAGFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=470478 H2789_RS00910 WP_004639902.1 204589..205182(+) (ssb) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACCTTTCCAAATGGGGGTTC
GTTGACTCAATTTTCAATCGCGACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGTCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGACGTCAACAAGGTGAACAAGGGTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAATAACCAAGGTGGTGGTTATAACCAAAATAGTGGTGGCGGCTATGGCAGCAAC
CCAGCTGGTTTTGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGTTTTGCTCCAAAAGCTCCACAGCAACCAGCTTCTGC
TCCAGCAGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.804

100

0.518
  ssb Vibrio cholerae strain A1552

44.059

100

0.452
  ssb Neisseria meningitidis MC58

39.487

98.985

0.391
  ssb Neisseria gonorrhoeae MS11

38.462

98.985

0.381