Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H2785_RS01585 Genome accession   NZ_CP059546
Coordinates   343739..344221 (+) Length   160 a.a.
NCBI ID   WP_001046416.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10_4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338739..349221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS01575 (H2785_01575) pilX 339042..339860 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H2785_RS01580 (H2785_01580) pilY1 339872..343726 (+) 3855 WP_024432273.1 PilC/PilY family type IV pilus protein Machinery gene
  H2785_RS01585 (H2785_01585) pilY2 343739..344221 (+) 483 WP_001046416.1 type IV pilin protein Machinery gene
  H2785_RS01590 (H2785_01590) pilE 344218..344643 (+) 426 WP_223069842.1 type IV pilin protein Machinery gene
  H2785_RS01595 (H2785_01595) rpsP 344790..345041 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H2785_RS01600 (H2785_01600) rimM 345061..345609 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H2785_RS01605 (H2785_01605) trmD 345655..346395 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H2785_RS01610 (H2785_01610) rplS 346603..346971 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H2785_RS01615 (H2785_01615) - 347023..347964 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  H2785_RS01620 (H2785_01620) - 348079..349113 (-) 1035 WP_002062194.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=470347 H2785_RS01585 WP_001046416.1 343739..344221(+) (pilY2) [Acinetobacter baumannii strain 10_4]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=470347 H2785_RS01585 WP_001046416.1 343739..344221(+) (pilY2) [Acinetobacter baumannii strain 10_4]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444